Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02003 ATGGCCCTCGAGACCAGTTTGCGGGTAACCACTGTAGGCACAGCCAGACCTCAATGTCTTTCTCCATCCTTTTCAACTTCAAGGGAAAAGCTTGTTTTCCCAACTCACAGAGGGTTCAAGAAAACCATGCTCAACTCAACAGTACCATACCCATCTCTTTACTCCACCGGTGGTACCTCCAGAAAATCCCGTTTTACTTGCAATGCTCGTGAAACAGTAAATGAAGTTCGAGTAGTGACTGACTCAAGCTGGAATGACCTTGTCATTGCAAGTGAAAAACCTGTGCTGGTAGATTTTTGGGCACCATGGTGTGGTCCATGCAGGATGATAGCGCCTATTATTGATGAGTTAGCCAAAGAATATGCTGGAAAAATTGCGTGCTATAAGCTGAACACAGATGACTGTCCAAACATAGCAACACAGTACGGCATCAGAAGCATACCAACAGTTTTATTCTTCAAGAATGGAGAGAAGAAAGAAAGTGTAATCGGTGCAGTTCCCAAGGACACTCTGGCCGCAACAGTGGAGAAATATATTGATATATGA 546 0.4414 MALETSLRVTTVGTARPQCLSPSFSTSREKLVFPTHRGFKKTMLNSTVPYPSLYSTGGTSRKSRFTCNARETVNEVRVVTDSSWNDLVIASEKPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIACYKLNTDDCPNIATQYGIRSIPTVLFFKNGEKKESVIGAVPKDTLAATVEKYIDI* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02003 181 PANTHER GEO12009P1 68 179 - -
Rops10g02003 181 ProSitePatterns Thioredoxin family active site. 96 114 IPR017937 -
Rops10g02003 181 SUPERFAMILY Thioredoxin-like 65 180 IPR036249 -
Rops10g02003 181 Pfam Thioredoxin 76 176 IPR013766 -
Rops10g02003 181 PRINTS Thioredoxin family signature 95 103 - -
Rops10g02003 181 PRINTS Thioredoxin family signature 143 154 - -
Rops10g02003 181 PRINTS Thioredoxin family signature 103 112 - -
Rops10g02003 181 Gene3D Glutaredoxin 76 180 - -
Rops10g02003 181 ProSiteProfiles Thioredoxin domain profile. 42 180 IPR013766 -
Rops10g02003 181 FunFam Thioredoxin 70 179 - -
Rops10g02003 181 CDD TRX_family 88 176 - -
Rops10g02003 181 NCBIfam thioredoxin 80 178 IPR005746 GO:0015035
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02003 Rops-Chr10 36524917 36526731 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02003 K03671 - gmx:100305596 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02003 10 36524917 36526731 Rops10g02003 10 36524917 36526731 ECH