Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops10g01991 | ATGTATACCTATTTGGGTAATCACTGTCTCAATCTTTACTCTGAGTTCGGCCACATCAATGATGCCTTGAAGGTTTTTAATGATATTTCTCATAAGAACTCCACGTCCTGGAACATTTGCTTAAAAGGGTTGTTCAAAAGTGGCCAGCTTGGCAAGGCCTGCCACTTGTTTGATGAAATGCCTGTTAGAGATGTTGTAAGCTGGAACTCCATGATTTCAGGTTATGCTTCTTATGGATTTTTTAGTCATGCCTTGGAGCTTTTTGTTGAAATGCAAGATGCTGGTGTGAGACCAAGTGGGTTCACTTTCTCCATTCTGACTTCACTCGTGTCAAGTCCCTGTCATGCTAAGCAGGTTCATGGTAGGATGATCAAAAGTGGGATGGATTTGTTTAATGTAGTGCTTGGGAATTCATTAATAACTATGTATGGGAAGCTTGGTCTTGTTGATTATTCTTTTGGTGTGATTTTGACTATGAAGCAGTTTGATCTTATATCTTGGAACTCTCTGATTTGGGCCTTTCATAGAGCCGGACATCAAGAACTGGCTCTAGACCAGTTCTATCACATGAGAGCTACGGGGTTGTTGCCTGACCATTTCACGTGTTCAATATTGATGAGTGTTTGTTCTGACTTGCGAGATTTGGACAAGGGTAAGCAAGTTTTTGCCTTTTGTTTCAAGGTGGGATTTGTTTATAATAGCATTGTATCAAGTGCTGCTATTGATCTCTTTTCCAAATGCAACAGATTGGAGGATTCTGTCCAGCTCTTTATTGAACAAGATCAATGGGATTCGGTTCTGTGCAATTCCATGATTTCAAGCTATGCTAGACATGATTTTGGGGAAGATGCTCTGCAACTTTTTGTGCTGACCTTGAGAAAGAATATCAGGCCAACAGAATACATGGTTAGCTGTCTTCTGAGTTCTGTTTCAATTTTCTTACCGGTAGAAGTGGGTAATCAAATCCATGCTATGGTTCCTAAATTGGGTTTCGAGTCAGATGCAGTTGTTGCCAATTCACTTGTTGATATGTATGCTAAATTTGGATTTATTGATGATGCCTTGATTATCTTCAATGAAATGAAAATAAAAGATTTGGTATCATGGAACACGATAATGATGGGACTGACTTACAATGGCAAAGTGTCAGTGACCATGGACCTCTTCAAGGAATTGATTAGAGAAGGTATGCAACCAGATCAAATAACACTTGCTGCAGTTCTACTAGCATGCAACTATGGGAGTTTGGTTGATGAAGGAATTAAAATATTTTCCTCAATGGAGATGGAATATGGAGTAAAACCAGGGGAAGAACATAATGCATATGTTGTGGAGATGTTGAGTAAAGCTGGTAGGCTCAAAGAAGCCATTGACATTGTAGAAACAATGCCGTATAGAACTACCCCTGATATTTGGAGGTCAATTCTTTCTGCTTGTGCAACATTTGGAGACTTGCGAGATATTGAAAGAGTTGCAACGAAAATAATAGAGAAGGCACCCCAGACGTCCTTACCTTACTTGGTGTTGGCTCAGGCATATCAGATGAGGGGCAGATGGGAGAGCATGGTTCGAGTGAGGAAGGCTATGGAACATAGAGGTACTAAAGAGTTCATTGGATGCAGTTGGGTTGGAATTAAAAACCATGTATACACATTTCCATCAAATCAATTACAGCATTATGGTGGCAAGGAACTCTATTTGCTGTTGAATTTACTGGTATGGGAGATGGAGACTCAAGGTTATGTCTAA | 1749 | 0.3997 | MYTYLGNHCLNLYSEFGHINDALKVFNDISHKNSTSWNICLKGLFKSGQLGKACHLFDEMPVRDVVSWNSMISGYASYGFFSHALELFVEMQDAGVRPSGFTFSILTSLVSSPCHAKQVHGRMIKSGMDLFNVVLGNSLITMYGKLGLVDYSFGVILTMKQFDLISWNSLIWAFHRAGHQELALDQFYHMRATGLLPDHFTCSILMSVCSDLRDLDKGKQVFAFCFKVGFVYNSIVSSAAIDLFSKCNRLEDSVQLFIEQDQWDSVLCNSMISSYARHDFGEDALQLFVLTLRKNIRPTEYMVSCLLSSVSIFLPVEVGNQIHAMVPKLGFESDAVVANSLVDMYAKFGFIDDALIIFNEMKIKDLVSWNTIMMGLTYNGKVSVTMDLFKELIREGMQPDQITLAAVLLACNYGSLVDEGIKIFSSMEMEYGVKPGEEHNAYVVEMLSKAGRLKEAIDIVETMPYRTTPDIWRSILSACATFGDLRDIERVATKIIEKAPQTSLPYLVLAQAYQMRGRWESMVRVRKAMEHRGTKEFIGCSWVGIKNHVYTFPSNQLQHYGGKELYLLLNLLVWEMETQGYV* | 583 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops10g01991 | 582 | Pfam | Pentatricopeptide repeat domain | 161 | 210 | IPR002885 | - | |
| Rops10g01991 | 582 | Gene3D | Tetratricopeptide repeat domain | 319 | 415 | IPR011990 | GO:0005515 | |
| Rops10g01991 | 582 | Gene3D | Tetratricopeptide repeat domain | 4 | 113 | IPR011990 | GO:0005515 | |
| Rops10g01991 | 582 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 46 | 582 | IPR046960 | GO:0003723|GO:0009451 | |
| Rops10g01991 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 33 | 63 | IPR002885 | - | |
| Rops10g01991 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 163 | 197 | IPR002885 | - | |
| Rops10g01991 | 582 | Gene3D | Tetratricopeptide repeat domain | 114 | 223 | IPR011990 | GO:0005515 | |
| Rops10g01991 | 582 | Gene3D | Tetratricopeptide repeat domain | 416 | 548 | IPR011990 | GO:0005515 | |
| Rops10g01991 | 582 | Pfam | PPR repeat family | 63 | 106 | IPR002885 | - | |
| Rops10g01991 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 334 | 364 | IPR002885 | - | |
| Rops10g01991 | 582 | FunFam | Pentatricopeptide repeat-containing protein At3g49710 | 1 | 114 | - | - | |
| Rops10g01991 | 582 | NCBIfam | pentatricopeptide repeat | 367 | 400 | IPR002885 | - | |
| Rops10g01991 | 582 | NCBIfam | pentatricopeptide repeat | 36 | 65 | IPR002885 | - | |
| Rops10g01991 | 582 | NCBIfam | pentatricopeptide repeat | 266 | 299 | IPR002885 | - | |
| Rops10g01991 | 582 | NCBIfam | pentatricopeptide repeat | 66 | 99 | IPR002885 | - | |
| Rops10g01991 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 264 | 298 | IPR002885 | - | |
| Rops10g01991 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 64 | 98 | IPR002885 | - | |
| Rops10g01991 | 582 | Gene3D | Tetratricopeptide repeat domain | 224 | 312 | IPR011990 | GO:0005515 | |
| Rops10g01991 | 582 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 365 | 399 | IPR002885 | - | |
| Rops10g01991 | 582 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic | 336 | 561 | - | - | |
| Rops10g01991 | 582 | Pfam | PPR repeat | 367 | 396 | IPR002885 | - | |
| Rops10g01991 | 582 | Pfam | PPR repeat | 266 | 292 | IPR002885 | - | |
| Rops10g01991 | 582 | Pfam | PPR repeat | 337 | 364 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops10g01991 | Rops-Chr10 | 36320016 | 36321764 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops10g01991 | 53 | 582 | Glycoside Hydrolase | AT3G49170 | 31.041 | 8.50e-83 | 275 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops10g01991 | - | - | gmx:102663822 | 968.378 |