Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01944 ATGGCCACGCTCTCATATTCACCGTTCTTCGCCGTTCATAGAACCACTTCAAGAGACTCCAATGCCTTCTTCATTCCACCGCGTCCTTCACTTCATTCTTGGCCTCACTTGCAACGACGTCGTTCCAAGCCCCTTTCCGTTGTTGCCATCGCGTCTTTGAAGCAAAATCTTGGTCACGTTCGAAAGAGTTTCAGTGACTTCACGAGCTTGAACTATTGGGTTGTTCGTGACTATTACCGTCTCGTTAACTCCGTCAATGCCTTCGAGCCGCGGATTCAGAATCTCTCCGATGAACAATTGGCTGCGAAAACCCAAGAGTTTCGACTCCGGCTCACAAGAGGGGAAACCCTTGCGGATATTCAAGCAGAGGCGTTTGCTGTTGTTCGGGAAGCTGCTAGAAGAAAACTTGGAATGCGCCATTTTGATGTTCAGATTATTGGTGGAGCAGTGCTGCATGATGGGTCCATTGCCGAGATGAAAACGGGGGAGGGAAAAACCTTGGTTTCCACACTGGCAGCATATCTTAATGCCTTGACAGCTGAGGGTGTCCATGTGGTAACTGTCAACGATTATTTAGCTCAACGTGATGCTGAATGGATGGGGCGTGTTCATCGTTTCTTGGGTCTTTCTGTTGGTCTTATTCAGAGGGGGATGGATGCTGAAGAACGGAGATTCAACTATAGATGTGATATAACATATACCAATAATTCGGAGCTCGGCTTTGATTACTTGCGAGATAATCTAGCTGGAAATCGAGATCAGCTTGTAATGAGATGGCCAAAGCCATTTCATTTTGCAATTGTTGATGAGGTGGACTCTGTCTTGATAGATGAAGGGAGAAATCCTTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCAAGATATCCTGTTGCTGCAAAAGTAGCAGAACTGCTCATACGAGGCACTCATTACAAAGTGGAGCTTAAAGATAATTCGGTGGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCTAGATTTGTGATGAATGCTTTAAAAGCTAAGGAATTCTATCGTCGAGATGTGCAATACATTGTCAGAGATGGGAAGGCTTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCGGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTTGTGGCACAGATCACATACCAGTCATTATTTAAGCTCTATCCAAAATTGTCAGGAATGACTGGAACTGCAAAAACAGAAGAGAAGGAGTTCTTAAAAATGTTCCAGGTGCCTGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGTAAAGATTTACCCATTCAAGCATTTGCTGTAGGACATCTAAAGTTCATTATTGTTGCTTCTTAA 1446 0.4419 MATLSYSPFFAVHRTTSRDSNAFFIPPRPSLHSWPHLQRRRSKPLSVVAIASLKQNLGHVRKSFSDFTSLNYWVVRDYYRLVNSVNAFEPRIQNLSDEQLAAKTQEFRLRLTRGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTAEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMDAEERRFNYRCDITYTNNSELGFDYLRDNLAGNRDQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLIRGTHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQVPVIEVPTNLPNIRKDLPIQAFAVGHLKFIIVAS* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01944 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 456 IPR027417 -
Rops10g01944 481 Pfam SecA DEAD-like domain 74 442 IPR011115 GO:0005524|GO:0016020|GO:0017038
Rops10g01944 481 SMART SecA_DEAD_2 63 443 IPR011115 GO:0005524|GO:0016020|GO:0017038
Rops10g01944 481 PRINTS SecA protein signature 158 172 IPR000185 GO:0005524|GO:0006605|GO:0006886
Rops10g01944 481 PRINTS SecA protein signature 120 144 IPR000185 GO:0005524|GO:0006605|GO:0006886
Rops10g01944 481 PRINTS SecA protein signature 227 247 IPR000185 GO:0005524|GO:0006605|GO:0006886
Rops10g01944 481 PRINTS SecA protein signature 380 402 IPR000185 GO:0005524|GO:0006605|GO:0006886
Rops10g01944 481 PRINTS SecA protein signature 454 467 IPR000185 GO:0005524|GO:0006605|GO:0006886
Rops10g01944 481 PRINTS SecA protein signature 174 184 IPR000185 GO:0005524|GO:0006605|GO:0006886
Rops10g01944 481 PRINTS SecA protein signature 417 434 IPR000185 GO:0005524|GO:0006605|GO:0006886
Rops10g01944 481 Pfam SecA preprotein cross-linking domain 295 399 IPR011130 GO:0016020|GO:0017038
Rops10g01944 481 FunFam Protein translocase subunit SecA 78 303 - -
Rops10g01944 481 SUPERFAMILY Pre-protein crosslinking domain of SecA 287 408 IPR036670 GO:0016020|GO:0017038
Rops10g01944 481 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 47 470 IPR000185 GO:0005524|GO:0006605|GO:0006886
Rops10g01944 481 Gene3D - 79 456 IPR027417 -
Rops10g01944 481 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 309 IPR014001 -
Rops10g01944 481 SMART SecA_PP_bind_2 288 399 IPR011130 GO:0016020|GO:0017038
Rops10g01944 481 FunFam Preprotein translocase SecA subunit 289 409 - -
Rops10g01944 481 ProSiteProfiles SecA family profile. 60 481 IPR014018 -
Rops10g01944 481 CDD DEXDc_SecA 99 455 - -
Rops10g01944 481 Gene3D - 289 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01944 Rops-Chr10 35553639 35559019 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01944 K03070 - qsu:112030627 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01944 10 35553639 35559019 Rops10g01944 10 35553639 35559019 ECH