Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01939 ATGATTAAGATTTTCTGCCACAGAAACAAATCATTGTTATCACACAAATGGGTATCATTTGCCAAAATGTGCAGTACCACAAGTGAACCAATTGAGGATGTTGCAGATATGACTGAAACAGTGTACAAGGTTATGATGTCTTGTCCTACTGTTACACTTGATACTGCTCTTAATCAAAGTGGGGTTAGAGTTTCTCCTGATTTAGTGGAAAATGTTCTCAAGAGGTTTGAGAATGCAGGCATGTCTGCATTTCGGTTCTTTGAATGGGCAGAGAAGCAGAGAAATTACACTCACACCATTAGGGCATATCACTTGATGATTGAGTCTTTGGCGAAGATTAGACAGTATCAGATCACGTGGGACCTTGTTAATGCAATGAGGAAAAAGGGGTTGCTAAATGTTGAAACTTTTTGTATAATTATGAGAAAGTATGCTAGGGCTCACAAGGTAGATGAGGCTATTTACACTTTTAATGTCATGGATAAACATGACATACCTCCAAATCTTGCTGCTTTTAATGGTTTGTTAAGTGCTTTATGTAAGTCCAGGAATGTTAGGAAGGCTCAAGAGATCTTTGATAGTATGAAGGGTCAGTTTGCCCCTGATTCGAAGACTTATAGCATATTGCTTGAGGGGTGGGGAAAGGCTCCAAATCTTCCCAAAGCAAGGGAGATTTTTAGAGAGATGGTTTATGAGGGATGCAGCCCTGATATTGTTACTTATGGTATAATGGTTGATATTCTTTGCAAAGCAGGGAGAGTTGATGAAGCTGTTGAGGTTGTCAAGGATATGGATGCTAACAATTGCAGGCCGACATCCTTCATTTATAGTGTCTTGGTTCATACTTATGGAGTGGAAAACCGGATTGAAGATGCTATTGATACATTCCTGGAGATGGAAAGGAAAAGAATCAAGGCAGATGTTGTGGTGTATAATGCATTGATTGGTGCTTTTTGTAAAGCAAACAAATTTAAAAACGTGCATAGGGTCTTGAAAGAGATGGAATGCAATGGTGTTGCTCCCAATTCAAGGACTTGTAACGTTATCATAAGCAGTTTGATAAGCCAGGGGCAGACTGATAGAGCTTTTGGAGTCTTCCGCCGGATGATCAAGTCATGTGAACCAGATGCTGACACTTACACAATGATGATAAAAATGTTTTGTGAGAGAAATGAACTGGAGATGGCTCTGAAAATATGGAGGTATATGAAGTCAAAACAGTTTGTCCCAAGCATGCACACCTTTTCAGCCCTTATCAATGGGTTGTGTGAGAAGGGCAGTGTTATGAAAGCTTGTGTTTTGCTGGAAGAGATGATAGAGAAGGGAATTCGACCATCACGTTATACATTTGGGAGGTTAAGACAGTTGCTTATAAAGGAAGGCAGAGAGGATGTGCTCAAATTTCTTCATGAGAAAATGAATCTTCTTGTCAAGGAGCCTTTGTATGATTAA 1452 0.396 MIKIFCHRNKSLLSHKWVSFAKMCSTTSEPIEDVADMTETVYKVMMSCPTVTLDTALNQSGVRVSPDLVENVLKRFENAGMSAFRFFEWAEKQRNYTHTIRAYHLMIESLAKIRQYQITWDLVNAMRKKGLLNVETFCIIMRKYARAHKVDEAIYTFNVMDKHDIPPNLAAFNGLLSALCKSRNVRKAQEIFDSMKGQFAPDSKTYSILLEGWGKAPNLPKAREIFREMVYEGCSPDIVTYGIMVDILCKAGRVDEAVEVVKDMDANNCRPTSFIYSVLVHTYGVENRIEDAIDTFLEMERKRIKADVVVYNALIGAFCKANKFKNVHRVLKEMECNGVAPNSRTCNVIISSLISQGQTDRAFGVFRRMIKSCEPDADTYTMMIKMFCERNELEMALKIWRYMKSKQFVPSMHTFSALINGLCEKGSVMKACVLLEEMIEKGIRPSRYTFGRLRQLLIKEGREDVLKFLHEKMNLLVKEPLYD* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01939 483 Pfam PPR repeat 233 264 IPR002885 -
Rops10g01939 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Rops10g01939 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 198 IPR002885 -
Rops10g01939 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Rops10g01939 483 Pfam PPR repeat 275 304 IPR002885 -
Rops10g01939 483 Pfam PPR repeat 136 164 IPR002885 -
Rops10g01939 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 372 IPR002885 -
Rops10g01939 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Rops10g01939 483 Gene3D Tetratricopeptide repeat domain 333 481 IPR011990 GO:0005515
Rops10g01939 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Rops10g01939 483 Pfam PPR repeat family 375 423 IPR002885 -
Rops10g01939 483 Pfam PPR repeat family 307 353 IPR002885 -
Rops10g01939 483 Pfam PPR repeat family 167 212 IPR002885 -
Rops10g01939 483 SUPERFAMILY TPR-like 99 401 IPR011990 GO:0005515
Rops10g01939 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Rops10g01939 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Rops10g01939 483 Gene3D Tetratricopeptide repeat domain 266 332 IPR011990 GO:0005515
Rops10g01939 483 Gene3D Tetratricopeptide repeat domain 29 195 IPR011990 GO:0005515
Rops10g01939 483 Gene3D Tetratricopeptide repeat domain 196 265 IPR011990 GO:0005515
Rops10g01939 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Rops10g01939 483 NCBIfam pentatricopeptide repeat 239 272 IPR002885 -
Rops10g01939 483 NCBIfam pentatricopeptide repeat 309 342 IPR002885 -
Rops10g01939 483 NCBIfam pentatricopeptide repeat 379 411 IPR002885 -
Rops10g01939 483 NCBIfam pentatricopeptide repeat 205 238 IPR002885 -
Rops10g01939 483 NCBIfam pentatricopeptide repeat 171 196 IPR002885 -
Rops10g01939 483 NCBIfam pentatricopeptide repeat 136 168 IPR002885 -
Rops10g01939 483 NCBIfam pentatricopeptide repeat 345 375 IPR002885 -
Rops10g01939 483 NCBIfam pentatricopeptide repeat 413 446 IPR002885 -
Rops10g01939 483 NCBIfam pentatricopeptide repeat 275 307 IPR002885 -
Rops10g01939 483 PANTHER ATPASE EXPRESSION PROTEIN 3 69 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01939 Rops-Chr10 35526522 35530237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01939 51 464 Glycosyltransferase AT1G05670 23.990 9.54e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01939 - - gmx:100790096 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01939 10 35526522 35530237 Rops10g01939 10 35526522 35530237 ECH