Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01842 ATGGAAAACACCGACGTTTTCTTAGGCTTACACGACTTCCTGGAGCGGATGCGGCAACCCTCCGCCGCCGATTTAGTCAAGGCAATCAAAAGTTTTATTGTATCGTTTTCAAACAATGCACCTGATCCTGAGAGGGACAGTGCCGCCGTACAAGAATTCCTTGCCAATATGGAAGCTGCTTTCAAAGCTCACCCTCTTTGGTCTGGTTGCTCTGAAGAGGAACTCGAAAGTGCGGGTGAAGGGCTTGAGAAGTACGTCATGACGAAGTTATTTGCCCGTGTATTTGCTTCACTTCCAGATGATGTAAAACTTGATGACCAACTTTCTGAGAAGATGGCTTTGATTCAACAGTTTGTTCGACCAGAATATTTGGATATCAAGCCAGCTTTTCAAAATGAAACATCATGGTTGCTTGCACAGAAAGAATTACAGAAGATCAACATGTACAAGGCACCCAGAGACAAACTTGTTTGTATACTGAATTGTTGCAAGGTTATCGGTAACTTGCTGCTTAATGCTTCTGTGGCTTCCAAAGAGAATCCTCCAGGAGCGGATGAATTTCTTCCTGTGCTGATTTATGTTACCATAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGACGCCAATCTCGATTGGTTGCAGAAGCAGCATATTATTTTACAAACATGCTCTCTGCTGCGTCATTCATCTCAAACATTGATGCAAATGCCCTTTCAATGGATGAGAATGAGTTTGAGAGAAACATGGAATTTGCTCGTGCTCTTCTTTCGGGGCTTTCAGTTGATACGCAAGATCCCAATTCACCTCATCGAAATAACGGACAGCATCCAAGAGCAGAGCCTACTAAGCACAAAAATAAAGCTTTGAATGATAACAAGGATCCTGCATTACAAACTCCAACATCTGTTGTGAAGTCAGAAAGTAAGAAATTGACTTTTGCAGATGAGTTGTCGATCACAAAAGTTCCATCCCTCTCGGATTTGGAGAATAAAGGGGCAAGTATGATTTTAAAGGAGGATAAGTTGAATGAAGTTTTCAGGGAGTTTCCATATTTGTTTGCTAGTGTAGGTGACCTAACAATAGGTGATGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTCCAAGTATGTGTCTCTTTCCAAAGGGTTAGGTGTCTCTCCTACATCTCATCCTCCATCCAATCCCCAAAATAATGCTCAAGACCATTCTGAAACCACAATAGATTCTTCAGAAGGTGGACCTGTAGGTGCTGAGGATAAATCAGAAAAAACTATTGATACGACAAAGGATGGTTCAGAAAAATCTACTGATACAGCAAAGGATGGTTCAGAAAAATCTACTGATACAACAAAGGATGGTTCAGAAAAATCTACTGATACAACAAAGGATGGTTTAGATGAAGTTTCACTTCTTGAGGAGAAAAGAAGTGAATCTAGTCTGCCACAGGATGAGGCAGTTGCACCTGAGGGTGATGCCCCCTCTTAA 1512 0.4134 MENTDVFLGLHDFLERMRQPSAADLVKAIKSFIVSFSNNAPDPERDSAAVQEFLANMEAAFKAHPLWSGCSEEELESAGEGLEKYVMTKLFARVFASLPDDVKLDDQLSEKMALIQQFVRPEYLDIKPAFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVIGNLLLNASVASKENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRRQSRLVAEAAYYFTNMLSAASFISNIDANALSMDENEFERNMEFARALLSGLSVDTQDPNSPHRNNGQHPRAEPTKHKNKALNDNKDPALQTPTSVVKSESKKLTFADELSITKVPSLSDLENKGASMILKEDKLNEVFREFPYLFASVGDLTIGDVEDLLNNYKQLVSKYVSLSKGLGVSPTSHPPSNPQNNAQDHSETTIDSSEGGPVGAEDKSEKTIDTTKDGSEKSTDTAKDGSEKSTDTTKDGSEKSTDTTKDGLDEVSLLEEKRSESSLPQDEAVAPEGDAPS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01842 503 Gene3D - 17 97 - -
Rops10g01842 503 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Rops10g01842 503 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Rops10g01842 503 FunFam Vacuolar protein sorting-associated protein 9A 17 97 - -
Rops10g01842 503 MobiDBLite consensus disorder prediction 283 298 - -
Rops10g01842 503 PANTHER RAB GDP/GTP EXCHANGE FACTOR 6 385 IPR045046 GO:0005085|GO:0016192
Rops10g01842 503 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Rops10g01842 503 Gene3D VPS9 domain 99 265 IPR037191 -
Rops10g01842 503 MobiDBLite consensus disorder prediction 393 419 - -
Rops10g01842 503 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Rops10g01842 503 MobiDBLite consensus disorder prediction 393 503 - -
Rops10g01842 503 MobiDBLite consensus disorder prediction 424 489 - -
Rops10g01842 503 MobiDBLite consensus disorder prediction 268 282 - -
Rops10g01842 503 SMART vps9_2 135 255 IPR003123 -
Rops10g01842 503 FunFam Vacuolar protein sorting-associated protein 9A 99 265 - -
Rops10g01842 503 MobiDBLite consensus disorder prediction 268 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01842 Rops-Chr10 34091701 34097721 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01842 K20131 - gmx:100810958 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01842 10 34091701 34097721 Rops10g01842 10 34091701 34097721 ECH