LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g01835	ATGGATTCTCAACCGGGTCTATCTCTCGGGTTGAATGCCCCGATGACGTTATCACCTCTGTCCACCCCTTCTGTTCAATGGCAGTTACTCCAAGAGAAAGATGACAAGTTCCTGATCAAACCCAAAGAAGAAGAAAAGGAAGAAGAAAAGGAAGAAGAAGAAGAAGGTGGTGGTGAAACGATTAACTTCATGGGTAGGTCTCTATGTGTGAAGAGGAGGTTAGAGGGGCAACAAACGTGTTTCCCTTCAAAGCGTGTGGCCGCTGATTCAGGGCTTGAAGCAAGGAGAAGTTGGGTGGTGGGTTGGGGGAACCAATCACTGGATGTTGCAGACCCTGAGATTCATGAAATCATGGAGAAGGAGAAGAGAAGACAGTTCAGAGGAATCGAGTTGATTGCGTCTGAGAACTTTGTGTGCAGGGCAGTTATGGAAGCTTTGGGTAGCCATTTGACTAATAAGTACTCTGAGGGAATGCCTGGAGCCAAGTACTATACTGGTAATCAATACATTGATCAAATTGAGTTTCTTTGTTGCAAGCGTGCATTGGTGGCCTTTGATCTTGATCCCAACAATTGGGGGGTTAATGTTCAACCTTATTCATGTACTTCTGCTAATTTTGCTGTCTACACTGGAATTTTGAATCCTGGGGATCGGATTATGGGTCTGGATTCACCGTCTGGTGGGCATTTGAGTCATGGATATTACACTCTTGGTGGGAAGAAGGTTTCTGCTGCGTCTATCTTCTTTGAGACTCTGTCTTACAAGGTCAATCAGCAAACTGGATACATAGACTATGACAAGCTTGAGGAAAAAGCACTTGATTTTCGACCCAAGATACTTATCTGTGGTGGCAGTTCCTATCCCAGAGAATGGGATTATGAGAGGTTCAGGCAGATTGCTGATAAATGTGGGGCAGTCTTGATGTGTGACATGGCTCATATCAGCGGTCTTGTGGCTGCTAAGGAAGTAGCTAGTCCATTTGATTACTGTGACATTGTTACCTCAACAACCCACAAAAGTCTCCGAGGTCCTAGGGGAGGTATCATCTTTTATAGAAGAGGGACAAGACCAAGGAAGCAAGGCTTTGTTCCTAATCACGGAGATGATAGTAATTATGATTTTGAGGAGAAGATAAACTTTGCTTTATATCCATCATTACAAGGAGGCCCCCACAACAATCACATTGCTGCTCTTGCCATAGCTTTAAAACATGTTGCAACTCCAGTGTACAAAGCATACATGCAGCAGGTGAAGAAAAATGCACAGGCATTAGCATCTGCCTTGTTGAGAAGAAAATGCAGATTGGTGACTGATGGGACCGACAATCATCTTTTGCTCTGGGATCTAACTGCACTTGGCTTAATTGACAGAAACTATGAGAAGGTCTGCGAGGCCAGTCACATCACTCTCAATAAATGTGCCATTTATGGTTCTATTTCTTCTGGAGGAGTGAGAATTGGTACTCCTGCAATGACTTCAAGAGGCTGTTTAGAGGATGATTTTGAGACTATGGCTGATTTTCTTCTGAGAGCAGCTCAGATTACCAGCATTGTACAGAGGGAACATGGGAAATCATTCAAAGATTTTCTTAAGGGTCTTCAGAATAATAAAGATATTACTGAGCTCAGAAATCGGGTTGAGACATTTAGTTCTCAGTTTGCAATGCCAGGATTTGATGTTTGA	1683	0.4337	MDSQPGLSLGLNAPMTLSPLSTPSVQWQLLQEKDDKFLIKPKEEEKEEEKEEEEEGGGETINFMGRSLCVKRRLEGQQTCFPSKRVAADSGLEARRSWVVGWGNQSLDVADPEIHEIMEKEKRRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQIEFLCCKRALVAFDLDPNNWGVNVQPYSCTSANFAVYTGILNPGDRIMGLDSPSGGHLSHGYYTLGGKKVSAASIFFETLSYKVNQQTGYIDYDKLEEKALDFRPKILICGGSSYPREWDYERFRQIADKCGAVLMCDMAHISGLVAAKEVASPFDYCDIVTSTTHKSLRGPRGGIIFYRRGTRPRKQGFVPNHGDDSNYDFEEKINFALYPSLQGGPHNNHIAALAIALKHVATPVYKAYMQQVKKNAQALASALLRRKCRLVTDGTDNHLLLWDLTALGLIDRNYEKVCEASHITLNKCAIYGSISSGGVRIGTPAMTSRGCLEDDFETMADFLLRAAQITSIVQREHGKSFKDFLKGLQNNKDITELRNRVETFSSQFAMPGFDV*	561

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g01835	560	Gene3D	-	136	415	IPR015421	GO:0003824
	Rops10g01835	560	Hamap	Serine hydroxymethyltransferase [glyA].	106	557	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Rops10g01835	560	Gene3D	Aspartate Aminotransferase, domain 1	111	556	IPR015422	GO:0003824
	Rops10g01835	560	MobiDBLite	consensus disorder prediction	38	60	-	-
	Rops10g01835	560	PANTHER	SERINE HYDROXYMETHYLTRANSFERASE	104	559	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Rops10g01835	560	ProSitePatterns	Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.	331	347	IPR019798	GO:0030170
	Rops10g01835	560	CDD	SHMT	111	549	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Rops10g01835	560	FunFam	Serine hydroxymethyltransferase	136	354	-	-
	Rops10g01835	560	Pfam	Serine hydroxymethyltransferase	108	507	IPR039429	-
	Rops10g01835	560	SUPERFAMILY	PLP-dependent transferases	103	557	IPR015424	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops10g01835	Rops-Chr10	34029986	34035973	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g01835	K00600		-	gmx:100776419	936.406

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops10g01835	10	34029986	34035973	Rops10g01835	10	34029986	34035973	ECH