Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01826 ATGTCACCTACCGTTGATGAAGAGAGTCCAAGACTAATTCCTAATCTCCCAGATGAGGTATCACTTCAGATTATTGCTAGACTTCCTAGAATTTTTTACTTCAATGTAAGGCTGGTGTCAAGGAAGTGGAAGTCAACTATCATGAGTTCAGAACTATATAAAGTAAGAAAAGAACTTGGGACAACTGAAGAGTGGCTATATCTGTTGATTAAGGTTGGAGATAATAAACTACTGTGGCATGCTTTAGATCCTCGTTCTCAGATATGGCAGAGACTGCCTAATATGCCTAATGTTGTTGATGAAGAGGAATCTAGAAAGGGTTCTTCTAGACTTTGGATGTGGAACATGGTGGAGGGTATCAGAATTGCTGATGTTATTAGAGGCTTTCTTGGACATAAGGATCCATTTGATGATATGCCCTTTTGTGGTTGTGCTATTGGAGCTGTTGATGGATGTCTGTATGTCCTAGGTGGATTCTCTAAAGCTTCAACTATGAGATGTGTATGGCGATTTGATCCAATACAAAATACATGGAACAAGGTGACTTCAATGTCCACGGGTCGAGCATATTGTAAGACAGGGATCTTGAATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCTGGACTGGTACCTCTTCAGTCTGCTGAAGTTTTTGACCCCTCTACAGATACATGGTCACATGTACCTAGCATGCCATTCTCAAGAGCTCAAGTGCTGCCCAGTGCTTTCTTGGCTGACATGTTAAAGCCTATTGCCACGGGATTGACCTCATACATGGGAAGGTTATGTGTTCCACAAAGTTTATATTCATGGCCCTTTTTTGTTGATGCTGGAGGAGAAATCTATGATCCTGAAACAAACTCATGGATAGAAATGCCAAATGGAATGGGAGAGGGTTGGCCTGCACGGCAGGCAGGTACAAAATTGAGTGTTGTAGTGGATGGTGAATTATATGCATTTGATCCTTCTAATTCTATGGATAGTGGAAGGATCAAGGTATATGATCAAGGAGAAGATGCTTGGAAAGTAGTTATTGGAAAAGTCCCCATTTATGATTCTGCTGATTCAGAGTCTCCATATCTACTTGCTGGTTTCCATGGAAAGCTTCATGTCATCACAAAAGATGCCAATCATAATATTACTGTTCTGCAGGCTGACCTGTGCAATAATTTGGATTCTTCACCATCACCCTCAACCCTGTCGCAAAGTTCCTTGCATGAATTTCCAGAACCCTCTGCTGAATCAGATGCAGTTGCTTGGAAGATAGTTGCCAGTAGGGGTTTTGGGCAGGCTGAACTAGTCAGTTGCCAAGTTATTGATATCTAG 1338 0.4163 MSPTVDEESPRLIPNLPDEVSLQIIARLPRIFYFNVRLVSRKWKSTIMSSELYKVRKELGTTEEWLYLLIKVGDNKLLWHALDPRSQIWQRLPNMPNVVDEEESRKGSSRLWMWNMVEGIRIADVIRGFLGHKDPFDDMPFCGCAIGAVDGCLYVLGGFSKASTMRCVWRFDPIQNTWNKVTSMSTGRAYCKTGILNNKLYVVGGVSQGQAGLVPLQSAEVFDPSTDTWSHVPSMPFSRAQVLPSAFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDAGGEIYDPETNSWIEMPNGMGEGWPARQAGTKLSVVVDGELYAFDPSNSMDSGRIKVYDQGEDAWKVVIGKVPIYDSADSESPYLLAGFHGKLHVITKDANHNITVLQADLCNNLDSSPSPSTLSQSSLHEFPEPSAESDAVAWKIVASRGFGQAELVSCQVIDI* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01826 445 Pfam F-box domain 14 53 IPR001810 GO:0005515
Rops10g01826 445 SMART kelc_smart 199 249 IPR006652 GO:0005515
Rops10g01826 445 SMART kelc_smart 152 198 IPR006652 GO:0005515
Rops10g01826 445 PANTHER OS02G0202900 PROTEIN 9 443 IPR045887 -
Rops10g01826 445 Pfam Kelch motif 188 236 IPR006652 GO:0005515
Rops10g01826 445 Pfam Kelch motif 140 185 IPR006652 GO:0005515
Rops10g01826 445 SUPERFAMILY Kelch motif 66 378 IPR015915 GO:0005515
Rops10g01826 445 Gene3D - 79 354 IPR015915 GO:0005515
Rops10g01826 445 CDD F-box_AtAFR-like 12 56 - -
Rops10g01826 445 ProSiteProfiles F-box domain profile. 10 56 IPR001810 GO:0005515
Rops10g01826 445 SMART fbox_2 16 56 IPR001810 GO:0005515
Rops10g01826 445 Gene3D - 11 66 - -
Rops10g01826 445 SUPERFAMILY F-box domain 9 83 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01826 Rops-Chr10 33933442 33935840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01826 13 304 EF-hand Containing Proteins AT4G39560 25.170 8.93e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01826 - - gmx:100806691 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01826 10 33933442 33935840 Rops10g01826 10 33933442 33935840 ECH