Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01815 ATGGCTGCTTTGCGTGTGTTTCGTCACATACACATGAACATGAATCACTGGCACTGCTTCTTCTTCACCCCACCAAGGCCACCCATGGGTTTGCTTTTTAATCCTTGTGCCACGTGTCACTCCAAACCTGTAAAACCCCGTGCATTTTCACGTAATTACAATTACAGGGTGGTGCCGAAGCAAGATGAGGAGGTGGTTGGTAATTCAACGACAATTGCGGCTATCGTAACCTCCTTGGGTGGTCCCCCTGCTGCCGTCGGAATCGTTCGACTTTCGGGTCCTCACGCTGTCTCTATTGCGGGTCAAGTCTTCCGACCCGCCAGGAACACGTGGCAGCCAACCAGCCATGTCGTCGAATACGGCGTCGCCTTGGATTCCAATGGAAATGTCATCGATGAGGTTTTGGCAGTGCCGATGCTGGCACCGAGGTCGTACACTCGCGAAGATGTGGTTGAACTTCAATGTCATGGAAGTGAAGTGTGTCTTCGTCGCGTACTCAGAACTTGTTTGGAAGCTGGAGCAACACTCGCTCAACCAGGCGAGTTTACTCTTCGTGCTTTTCTAAATGGTCGTTTAGATCTCTCCCAAGCTGAAAATGTTGGAAGACTTATCACTGCCAAATCTGTTGCTGCTGCTGATGCAGCACTTGCTGGAATCCAGGGTGGTTTCTCTTCTCTTGTTAGATCGTTGAGAATTCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGATTAGATTTTGATGATGAGATGCCACCTCTAGATTTGAATATGATTGTGGATAAAATACGTAATATGTCACGGGATGTTGAGAATGCATTGGAGACAGCTAATTATGACAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGCGTCAATGGGATTCCTATAACCCTTCTTGATACTGCAGGCATCAGGGACACTGATGACATTGTGGAAAAGATTGGTGTTGAGCGATCTGAAGCAGTTGCTAGGGGTGCAGATTTGATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACTTCTGAGGACACCAAACTTCTTGAAAGGATTCAATCTGCTAAGGGATCAGCTGGATCTTCCACCCCAGTAATCCTTGTGGTCAACAAGATAGATTGTGAACCTTGTGCTGAGACTGAATGGGACAAAGGATGTCACAGTCACAATTTTTTTAGCAAGCGTGTATTTACATGTGCTGTAACGGGTCAAGGATTACATGACTTAGAGAGGGCAGTTTTAGAGATTGTTGGTCTTGATGGCATTCCTGCTGGGGGTCGTAGATGGACTGTGAATCAGAGACAATGTGAACAACTTCTTCGGACCAAGGAAGCACTTACAAGGTTACAATCATCAATAAAGGAGGAACTACCCCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCAATGTCCCTTGGGCAAATTAGTGGAGAAGATATATCGGAGGAGATTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAA 1608 0.4558 MAALRVFRHIHMNMNHWHCFFFTPPRPPMGLLFNPCATCHSKPVKPRAFSRNYNYRVVPKQDEEVVGNSTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGQVFRPARNTWQPTSHVVEYGVALDSNGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLDLNMIVDKIRNMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVNGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKGSAGSSTPVILVVNKIDCEPCAETEWDKGCHSHNFFSKRVFTCAVTGQGLHDLERAVLEIVGLDGIPAGGRRWTVNQRQCEQLLRTKEALTRLQSSIKEELPLDFWTIDLRDAAMSLGQISGEDISEEILSNIFGKFCIGK* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01815 535 FunFam tRNA modification GTPase MnmE 287 463 - -
Rops10g01815 535 Hamap tRNA modification GTPase MnmE [mnmE]. 70 535 IPR004520 GO:0003924|GO:0005525|GO:0006400
Rops10g01815 535 PANTHER TRNA MODIFICATION GTPASE GTPBP3 51 535 - -
Rops10g01815 535 CDD trmE 284 456 IPR031168 -
Rops10g01815 535 Pfam MnmE helical domain 194 532 IPR025867 -
Rops10g01815 535 Gene3D - 287 463 IPR027417 -
Rops10g01815 535 Gene3D tRNA modification GTPase MnmE domain 2 192 535 IPR027368 -
Rops10g01815 535 FunFam tRNA modification GTPase MnmE 66 191 - -
Rops10g01815 535 Pfam 50S ribosome-binding GTPase 288 409 IPR006073 GO:0005525
Rops10g01815 535 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 286 456 IPR031168 -
Rops10g01815 535 Gene3D Probable tRNA modification gtpase trme; domain 1 57 191 IPR027266 GO:0005515
Rops10g01815 535 Pfam GTP-binding protein TrmE N-terminus 71 191 IPR018948 -
Rops10g01815 535 NCBIfam small GTP-binding protein domain 287 414 IPR005225 GO:0005525
Rops10g01815 535 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 84 535 IPR004520 GO:0003924|GO:0005525|GO:0006400
Rops10g01815 535 CDD TrmE_N 71 190 IPR018948 -
Rops10g01815 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 451 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01815 Rops-Chr10 33747826 33751725 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01815 K03650 - gmx:100818096 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01815 10 33747826 33751725 Rops10g01815 10 33747826 33751725 ECH