Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01807 ATGGCCCTCTCAGCACCCTTTACCTTTGTTACCTTCCTTTTTCTCATTCTTACTCTCACTCACAACCTCGTCCATGCCCAGTTAACTCAACCACCTCCTTTTGCATGCGATTGGTCGAACCCATCTTCCAGATCCTACCCATTCTGCAACCCGAAACTGCCCATAACTGAACGAACCAGAGACCTTGTCTCCAGACTCACATTGGATGAGAAACTTGCCCAACTCGTTGACTCAGCCCCTCCGATCCCCCGACTCGGTATCCCAGGTTACCAGTGGTGGAGTGAAGCACTGCATGGTGTTGGCAGCGTTGGTCATGGCATCCGTTTCAATGGCGCTATCACAGCTGCAACTAGCTTCCCTCAAGTCATCCTCACAGCAGCTACCTTTGACTCTCACCTCTGGTACAAAATCGGTCAGGCTATTGGAATTGAAGCGAGAGCAATATACAATGCGGGGCAAGCTATGGGGATGACATTTTGGGCTCCTAACATTAACATATTCAGGGATCCCAGATGGGGGAGAGGACAAGAGACAGCTGGTGAAGACCCTTTGATGACTTCCAACTATGCTGTTTCCTATGTCAGAGGCCTTCAAGGGGATTCCTTCCAAGGAGGGAAATTGAGGGGCCACCTTCAAGCTTCAGCTTGTTGCAAGCATTTTACTGCCTATGATTTGGACAATTGGAAGGGTGTTAATCGCTTTGTCTTTGATGCTCGTGTTACTTTGCAAGATTTAGCGGACACATATCAGCCACCATTTCGAAGTTGCGTACAGCAAGGACGAGCAAGTGGGATAATGTGTGCTTACAACCGTGTCAATGGGGTTCCAAACTGTGCAGATTACAATCTGTTAACCAAAACAGCAAGAAAACAATGGGATTTCCATGGGTACATTACGTCAGATTGTGGAGCAGTTGCTATCATACATGACGAGCAAGGGTATGCAAAATCAGCAGAGGATGCTGTGGCTGATGTTATTCGAGCCGGGATGGATTTGGAGTGCGGTACTTATTTGACAGACCATGCTAAATCAGCAGTGCTGCAGAAAAAATTACCTGAATCTCAAATAGAACGTGCCCTTCACAATCTGTTTTCCATTAGAATAAGGCTAGGTCTATTTGATGGAAATCCAACCAGGCTCCCATTTGGCATGATTGGCCCCAACCATGTCTGTTCCAAAGAGCACAGGTATCTAGCTCTTGAAGCTGCAAGAAATGGCATTGTCCTTTTGAAGAACACTGCTGCACTTCTCCCACTTCCAAAAACAAGCCCAACTATTTCCTTAGCAGTTATAGGTCCCAATGCCAATGCTTCCCCACTAACTCTTCTAGGAAACTATGCTGGCCCTCCTTGTAAATATACAACAATACTGCAAGGGTTTCAGCACTATGTTAAAAACACAGTTTTTCATCCTGGCTGTGATGGTGGACCAAAGTGTGCTTCAGCTCAAATAAACCAGGCAGTGGAAGTTGCAAAGAAAGTGGATTATGTGGTTCTGATCATGGGATTGGATCAAAGTGAAGAAAGGGAAGAACGTGATCGCCTTCACCTTGACTTGCCAGGCAAGCAACTGGAACTCATCGATAGTGTTGCCAAAGCTTCTAAGCGACCAGTGATTTTGGTGCTCCTTAGTGGAGGTCCTGTAGATATCAGTTCAGCCAAGTATGACAACAAAATTGGAGGCATCCTCTGGGCTGGTTATCCAGGGGAACTTGGAGGCATTGCACTTGCACAGATTATCTTTGGTGACCACAACCCAGGAGGAAGACTACCAATTACTTGGTACCCAAAAGATTACATCAAAGTGCCAATGACAGACATGAGGATGCGAGCTGATCCCTCAACAGGCTATCCCGGCAGAACTTACCGATTTTACAAGGGTCCAAAGGTGTATGAATTTGGCTATGGACTAAGCTACTCAAAATATTCCTATCAGTTTGTTTCTGTTACACATGACAAGCTTCACTTCAATCAGTCATCCACTCATTTGATGGTTGAAAACTCAGAAACCATCAGCTACAAATTAGTTTCTGAGTTGGGGGAAGAAACCTGTCAAAGCATGTCGGTCTCGGTCACTGTGGGAGTTAAAAATCATGGAAGCATGGTGGGGAAGCATCCTGTGTTGCTATTTATGAGGCCGGGAAAACAGAAAATTGGAAGTCCTATGAAACAGTTGGTGGGTTTTCAGAGTGTTATGCTAGATGCAGGGGAAATGGCTCAAGTTGGATTTGAGCTAAACCCTTGTGAGCATCTTAGTAGAGCAAATGAGGCTGGTTCAAAGGTCATAGAAGAAGGGTCTCATTTGTTGCTTGTGGGTGATGAAGAGTACCCAATAGCTATCATTGTTTGA 2349 0.4564 MALSAPFTFVTFLFLILTLTHNLVHAQLTQPPPFACDWSNPSSRSYPFCNPKLPITERTRDLVSRLTLDEKLAQLVDSAPPIPRLGIPGYQWWSEALHGVGSVGHGIRFNGAITAATSFPQVILTAATFDSHLWYKIGQAIGIEARAIYNAGQAMGMTFWAPNINIFRDPRWGRGQETAGEDPLMTSNYAVSYVRGLQGDSFQGGKLRGHLQASACCKHFTAYDLDNWKGVNRFVFDARVTLQDLADTYQPPFRSCVQQGRASGIMCAYNRVNGVPNCADYNLLTKTARKQWDFHGYITSDCGAVAIIHDEQGYAKSAEDAVADVIRAGMDLECGTYLTDHAKSAVLQKKLPESQIERALHNLFSIRIRLGLFDGNPTRLPFGMIGPNHVCSKEHRYLALEAARNGIVLLKNTAALLPLPKTSPTISLAVIGPNANASPLTLLGNYAGPPCKYTTILQGFQHYVKNTVFHPGCDGGPKCASAQINQAVEVAKKVDYVVLIMGLDQSEEREERDRLHLDLPGKQLELIDSVAKASKRPVILVLLSGGPVDISSAKYDNKIGGILWAGYPGELGGIALAQIIFGDHNPGGRLPITWYPKDYIKVPMTDMRMRADPSTGYPGRTYRFYKGPKVYEFGYGLSYSKYSYQFVSVTHDKLHFNQSSTHLMVENSETISYKLVSELGEETCQSMSVSVTVGVKNHGSMVGKHPVLLFMRPGKQKIGSPMKQLVGFQSVMLDAGEMAQVGFELNPCEHLSRANEAGSKVIEEGSHLLLVGDEEYPIAIIV* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01807 782 SMART Fn3_like_2 705 775 IPR026891 -
Rops10g01807 782 SUPERFAMILY (Trans)glycosidases 46 405 IPR017853 -
Rops10g01807 782 FunFam probable beta-D-xylosidase 7 58 379 - -
Rops10g01807 782 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 407 642 IPR036881 GO:0004553|GO:0005975
Rops10g01807 782 Pfam Fibronectin type III-like domain 707 773 IPR026891 -
Rops10g01807 782 Gene3D - 392 640 IPR036881 GO:0004553|GO:0005975
Rops10g01807 782 Gene3D Immunoglobulins 668 780 IPR013783 -
Rops10g01807 782 Gene3D - 58 379 IPR036962 GO:0004553|GO:0005975
Rops10g01807 782 FunFam probable beta-D-xylosidase 2 392 640 - -
Rops10g01807 782 PRINTS Glycosyl hydrolase family 3 signature 287 305 IPR001764 GO:0004553|GO:0005975
Rops10g01807 782 PRINTS Glycosyl hydrolase family 3 signature 119 138 IPR001764 GO:0004553|GO:0005975
Rops10g01807 782 PRINTS Glycosyl hydrolase family 3 signature 213 229 IPR001764 GO:0004553|GO:0005975
Rops10g01807 782 PANTHER SUGAR HYDROLASE-RELATED 28 778 IPR044993 GO:0009044|GO:0045493
Rops10g01807 782 Pfam Glycosyl hydrolase family 3 N terminal domain 113 363 IPR001764 GO:0004553|GO:0005975
Rops10g01807 782 Pfam Glycosyl hydrolase family 3 C-terminal domain 407 639 IPR002772 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01807 Rops-Chr10 33643072 33648370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01807 23 782 Glycoside Hydrolase AT1G78060 65.138 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01807 - - aprc:113867121 1409.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01807 10 33643072 33648370 Rops10g01807 10 33643072 33648370 ECH
Rops9g01523 9 25720291 25726312 Rops10g01807 10 33643072 33648370 PCT