Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01789 ATGGCAGCAATGCCAGCAAGGGACCTTTGCCACCAACAATATTCATATTCTCCTCCCATTTTCTTCAATCCAACTTCAGATTTTGGTTCATGTGGTGGTGGGTTGTTTCTGGAGCCCACAATTCCCGATTCCTTTGTTCGTTTCATTTCGTCGAGGATTCCTGTAACTGCTTCTGTTTCTTCCCAATCCAATCCTCGTAGAAGGGTTCCTGCTGGGTTTTTCTTGTCGGTGAGTTTGCCAAATGCTAAACTTGCTTCCCAACCCAAACCATGTGTACTGCAAAATGGGGACCACATCTCCGACAACAAGGAAACCACCTCTGACGGTGTCGTTCCGAAACCAAAGGTTAGGGTAAGAGGAGGCAATGCCCTCAACAACACCACCAAACATCTATGGGCTGGTGCTATAGCTGCCATGGTTTCTAGAACTTGTGTTGCTCCACTTGAAAGACTTAAGCTGGAATATATAGTTCGTGGTGAGAAGAAGAATATATTTGAGCTTATTAGAACAATTGCTGCTTCTCAAGGATTGAGAGGTTTTTGGAAAGGGAACCTTGTAAATATTCTGAGAACAGCTCCATTCAAAGCGGTTAATTTTTGTGCCTATGATACTTATAGAAAGCAACTACTCAGATACTCTGGAAATGAAGAAACCACCAATTTCGAGAGGTTTATTGCTGGTGCTGCTGCTGGCATTACTGCTACCATTATTTGCCTGCCACTTGATACTATCCGGACCAAGTTGGTGGCACCTGGTGGAGAAGCTTTGGGCGGTGTTATTGGTGCTTTCCAATACATGATTCGAACTGAAGGATTCTTTTCTCTTTACAAGGGTTTAGTACCATCACTTATAAGTATGGCTCCTTCTGGTGCAGTGTTTTATGGTGTATATGATATACTGAAATCAGCTTATCTGCATTCGCCGGAAGGAATGAAGAGAATCCAAAATATGCATAAACAGGGGCAGGAACTGAGTGCCTTTGATCAGCTAGAGTTGGGGCCGGTGAGGACATTGTTGTATGGGGCTATTGCTGGTGCATGTGCAGAAGCTGCTACATACCCATTTGAAGTGTTGAGGAGGAAGCTTCAATTGCAAGTGCAGTCTACTAGATTAAGTTCTTTAGCAACTTTTGTCAAAATAGTGGAACAGGGAGGCATTCCAGCTCTCTATGCAGGACTTATTCCCAGTTTATTACAGGTACTTCCTTCTGCTTCAATAAGTTACTTTGTCTATGAGTTCATGAAGATTGTTCTCAAAGTGGAGTAG 1266 0.4329 MAAMPARDLCHQQYSYSPPIFFNPTSDFGSCGGGLFLEPTIPDSFVRFISSRIPVTASVSSQSNPRRRVPAGFFLSVSLPNAKLASQPKPCVLQNGDHISDNKETTSDGVVPKPKVRVRGGNALNNTTKHLWAGAIAAMVSRTCVAPLERLKLEYIVRGEKKNIFELIRTIAASQGLRGFWKGNLVNILRTAPFKAVNFCAYDTYRKQLLRYSGNEETTNFERFIAGAAAGITATIICLPLDTIRTKLVAPGGEALGGVIGAFQYMIRTEGFFSLYKGLVPSLISMAPSGAVFYGVYDILKSAYLHSPEGMKRIQNMHKQGQELSAFDQLELGPVRTLLYGAIAGACAEAATYPFEVLRRKLQLQVQSTRLSSLATFVKIVEQGGIPALYAGLIPSLLQVLPSASISYFVYEFMKIVLKVE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01789 421 ProSiteProfiles Solute carrier (Solcar) repeat profile. 332 417 IPR018108 -
Rops10g01789 421 Pfam Mitochondrial carrier protein 332 418 IPR018108 -
Rops10g01789 421 Pfam Mitochondrial carrier protein 218 305 IPR018108 -
Rops10g01789 421 Pfam Mitochondrial carrier protein 127 211 IPR018108 -
Rops10g01789 421 Gene3D Mitochondrial carrier domain 122 420 IPR023395 -
Rops10g01789 421 ProSiteProfiles Solute carrier (Solcar) repeat profile. 218 303 IPR018108 -
Rops10g01789 421 PANTHER SOLUTE CARRIER FAMILY 25 123 420 - -
Rops10g01789 421 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 208 IPR018108 -
Rops10g01789 421 PRINTS Mitochondrial carrier protein signature 130 143 IPR002067 GO:0055085
Rops10g01789 421 PRINTS Mitochondrial carrier protein signature 143 157 IPR002067 GO:0055085
Rops10g01789 421 PRINTS Mitochondrial carrier protein signature 276 294 IPR002067 GO:0055085
Rops10g01789 421 PRINTS Mitochondrial carrier protein signature 183 203 IPR002067 GO:0055085
Rops10g01789 421 PRINTS Mitochondrial carrier protein signature 341 363 IPR002067 GO:0055085
Rops10g01789 421 PRINTS Mitochondrial carrier protein signature 233 251 IPR002067 GO:0055085
Rops10g01789 421 SUPERFAMILY Mitochondrial carrier 125 414 IPR023395 -
Rops10g01789 421 FunFam Mitochondrial substrate carrier family protein 124 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01789 Rops-Chr10 33299144 33302593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01789 73 400 Organic Solute Cotransporters AT5G64970 71.171 4.35e-163 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01789 - - gmx:100812227 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01789 10 33299144 33302593 Rops10g01789 10 33299144 33302593 ECH