Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01786 ATGTCAGGTGGTGGATGCAGCATAGTGTGGTTCAGAAGAGATCTGAGGGTAGAGGATAACCCTGCACTGAGTGCAGGAGTGAGAGCAGGAGCTGTGGTTGCAGTTTTCATATGGGCACCTGAAGAAGAAGGCCAATACTATCCTGGCAGGGTCTCAAGGTGGTGGCTCAAACACAGTTTGGCTCATCTTGATTCCTCTTTGAGAAGTCTTGGCACTCCTCTTATCACTAAGAGATCCACTGACACTGTTTCTTCTCTATTAGAGGTTGTTAAGTCCACTGGAGCTACTCAACTCTTTTTTAACCACTTATATGATCCCTTGTCACTTATCAGGGATCACCGAGCCAAGGAGGTTCTGACTGCTCAGGGCATCACAGTACGTTCCTTCAATGCAGATTTATTATATGAACCATGGGATGTCAATGATGTACATGGCCAACCATTCACAACTTTTGCTGCTTTTTGGGAAAGATGTCTCAGCATGCCTTATGATCCCGTGTCACCTCTTCTCCCACCTAAAAGGATTATTCCAGGTGATGTATCAAGGTGCCCTTGTGATACATTGGTGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTTGCTCGAGCATGGTCACCTGGGTGGAGCAATGCTAACAAGGCATTGACAACATTCATAAATGGTCCATTGATCGAGTACTCAAAAAATCGCAGGAAGGCTGACAGTGCCACTACCTCATTTCTCTCACCCCATTTGCATTTTGGTGAGGTGAGTGTCAAAAAGGTCTTCCATCTTGTCCGCATTAAGCAAGTTTTGTGGGCTAACGAAGGAAACAATGCTGGTGAAGAAAGTGTGAACTTGTTCCTTAAGTCAATTGGTCTTAGAGAATATTCAAGGTACATTAGTTTCAACCACCCTTATAGTCATGAAAGGCCTCTTCTAGGTCACCTTAAGTTCTTTCCTTGGGTAGTAAACGAAGGCTATTTCAAGGCATGGAGACAAGGTAGAACTGGTTACCCATTGGTGGATGCTGGCATGAGGGAGTTATGGGCCACTGGTTGGCTGCATGATAGGATACGTCTAGTAGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAATATTTCTGGGATACACTCTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGCACTCTCCCTGATGGTCGTGAACTTGACCGAATAGATAATCCACAGTTTGAGGGTTACAAATTTGACCCAAATGGAGAATATGTACGACGCTGGCTTCCAGAACTTGCTAGATTACCAACTGAATGGATACATCATCCGTGGAATGCGCCAGAACCAGTGCTTCAAGCTGCTGGAATTGAACTGGGATCAAATTATCCTCTTCCAATTGTGGGAATAGATGCAGCAAAAGCCAGATTACAAGAAGCACTATCAGAAATGTGGCAACTAGAAGCAGCTTCAAGAGCTGCGATTGAAAATGGAACCGAGGAAGGACTTGGAGACTCCTCTGAATCAGTCCCTCTTGCTTTTCCTCAAGACATACAAATGGAGGAAAGTGTTGAACCTGTTAGGAACAATCCTCCTCCTGTTACTCGGCGCTACCTTGACCAGATGGTTCCAAGCATCACTTCTTCCCTAGTGAGAGTGGAAGAGGAAGAAACTTCTTCAGATCTTCGAAACTCAGCAGAAGAAAGCAGCAGAGCTGAAGTGCCAGTAAATGTAAATGCACAACAAAATGCAAGAGACACATTAAACGAAGGGATATTGCAGATTGATCATAGAAATGCACGGCTACAAGATAATACTTCAATGGAGCACAGCAATGCAGCTGAAGATTCCACAGTAGAATCTTCAAGTAGTAGCAGGAAAGAAAGGGATGGAGGTGTAGTTCCAGTATGGTCTCCACCAGCTTCCAGTTACTCAGAACAATTTGTAGGAGATGAAAATGGTATGGCAAGCAGTGCATCTTACTTACAAAGGCATCCTCAGTCTCACCAAATGTTGAATTGGAGGAGGCTATCTCAGACCGGGTAA 2046 0.4457 MSGGGCSIVWFRRDLRVEDNPALSAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKHSLAHLDSSLRSLGTPLITKRSTDTVSSLLEVVKSTGATQLFFNHLYDPLSLIRDHRAKEVLTAQGITVRSFNADLLYEPWDVNDVHGQPFTTFAAFWERCLSMPYDPVSPLLPPKRIIPGDVSRCPCDTLVFEDESEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNNAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRLVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPEPVLQAAGIELGSNYPLPIVGIDAAKARLQEALSEMWQLEAASRAAIENGTEEGLGDSSESVPLAFPQDIQMEESVEPVRNNPPPVTRRYLDQMVPSITSSLVRVEEEETSSDLRNSAEESSRAEVPVNVNAQQNARDTLNEGILQIDHRNARLQDNTSMEHSNAAEDSTVESSSSSRKERDGGVVPVWSPPASSYSEQFVGDENGMASSASYLQRHPQSHQMLNWRRLSQTG* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01786 681 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Rops10g01786 681 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Rops10g01786 681 PANTHER CRYPTOCHROME 6 489 IPR002081 -
Rops10g01786 681 MobiDBLite consensus disorder prediction 602 620 - -
Rops10g01786 681 Coils Coil 470 490 - -
Rops10g01786 681 Gene3D - 134 293 - -
Rops10g01786 681 Pfam FAD binding domain of DNA photolyase 283 481 IPR005101 -
Rops10g01786 681 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Rops10g01786 681 FunFam Cryptochrome 1 8 147 - -
Rops10g01786 681 Gene3D HUPs 8 206 IPR014729 -
Rops10g01786 681 NCBIfam cryptochrome photoreceptor 6 482 IPR014134 GO:0009785|GO:0009882
Rops10g01786 681 MobiDBLite consensus disorder prediction 554 568 - -
Rops10g01786 681 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 488 IPR036134 -
Rops10g01786 681 MobiDBLite consensus disorder prediction 570 589 - -
Rops10g01786 681 MobiDBLite consensus disorder prediction 549 589 - -
Rops10g01786 681 PRINTS DNA photolyase signature 332 348 IPR002081 -
Rops10g01786 681 PRINTS DNA photolyase signature 352 370 IPR002081 -
Rops10g01786 681 PRINTS DNA photolyase signature 391 405 IPR002081 -
Rops10g01786 681 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Rops10g01786 681 MobiDBLite consensus disorder prediction 602 668 - -
Rops10g01786 681 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Rops10g01786 681 MobiDBLite consensus disorder prediction 640 668 - -
Rops10g01786 681 Pfam DNA photolyase 7 163 IPR006050 -
Rops10g01786 681 Pfam Blue/Ultraviolet sensing protein C terminal 511 626 IPR020978 -
Rops10g01786 681 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01786 Rops-Chr10 33216264 33220434 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01786 K12118 - gmx:100233233 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01786 10 33216264 33220434 Rops10g01786 10 33216264 33220434 ECH
Rops9g01502 9 25205099 25210010 Rops10g01786 10 33216264 33220434 PCT