Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01742 ATGGCGAACCGCTCCCTCTCCGGCGGATTCAGACGGTGCGCCGCCAGTATCAGTTTTGTGTTCGGCTCTCGAAGTCTGTGTAACCCCGCAGCTTCTGCGTTCGGGAAAAAGCACGTCCTGAAGAATCGAATTCCAGGACTAAAATCCCCCAAACAGAGCCCATTGCCAGCGCTTCAAAATTGGGTGGAGCAAGGCAACGAGGTTTCACCCTCCGAACTCAGACGCATCTCCAGAACCTTCCTCAAATCCAAACGTTACCACCATGCACTGGAGGCATTGAAATGGATGGAAAATCAGAACAATTTTCATATGATCCCAGTTGATTATGCTATGAAATTGGAGTTAATTATTAAAAATTATGGTTTAATTGAAGCTGAAGAATATTTTTTTAGTATACCTGACTCAGCTGCAAAGAAAGCTTCATGTCTCTATCTTCTACGTGGCTATGTAAGAGATAGGGACATTATTAAAGCTGAAAATTTGATGGTGAAGCTCTATGAACTGGGGCTAGTGGTGAGCCCTCACCCTTATAATGAGATGATGAAACTATATATTGCCACGTGTGAGTACAGGAAGGTACCCCTTGTTATCGAGCAAATGAAGCGAAATAAAGTGCCTTACAATGTTCTTTCATACAACCTTTGGATGAATGCTTGTGGTGAGGGAGAAGGAGAAGGATATGGGGTTGCAGCAGTGGAGAAAGTTTTTAGAGTAATGCAAAATGATGAGAATATTGAAGTGGGATGGAGCAGTCTTGCTACTTTAGCCAATGTTTATATGAAAGCAGGACAATTTGATAAAGCCATTCTGGTTCTAAAAAATGCTGAAAAGAAACTATCTAATTGTAACCGTCTTGGTTACTTCTTCCTCATAACACTATATGCCTCTTTGAATGAAAAAGAGGGAGTCCTGCGGTTATGGGAAGCTAGCAAGGCGGTTGGTGGGAGAATCAGTTGTGCCAACTACATTTGTATATTGACGTGCTTGGTGAAGCTTGGGGACATTGTAGAAGCCGAGAGAATCTTCATGGAATGGGAATCTAATTGTCTGAAGTACGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATGTGCGGAAGGGATCAATGGAAGAAGCTGAATCATTACATCTCCATACATTGCATAAGGGTGGTTGTCCAAACTACAAGACTTGGGAGATTCTCATCGAAGGATATGTCAATGGGCAAAGAATGGATGAGGCTGTTATTGCCATGAAGAGAGCTTTGGCTATGTTGAAAGACTGTCATTGGAGGCCTCCACATGGACTTGTATTAGCCATAGCAGAGTATTTGGAGAAACAAATGAATTTTGAATATGCAAATGAGTATATTACAAATATCCATAATTTTGGTCTTGTAAGTTTATCATTGTGTAAAATATTGCTTAGAATGCACCTTTCTGCTAACAAACCACCTTTCCATATCCTTAAAATGATGGAGGAAGGTAAAGTTGAGATGGATGATGAGACCCTTTCCATTCTTAAAGCCTTCATTGGGCTGAAGTGTTTGGAGAATCTGAAAAATAGGATGGGTACCAACCAACCGAAGGATGAAAAGCTGCAGTTTCTCAGCGTTTAA 1599 0.4134 MANRSLSGGFRRCAASISFVFGSRSLCNPAASAFGKKHVLKNRIPGLKSPKQSPLPALQNWVEQGNEVSPSELRRISRTFLKSKRYHHALEALKWMENQNNFHMIPVDYAMKLELIIKNYGLIEAEEYFFSIPDSAAKKASCLYLLRGYVRDRDIIKAENLMVKLYELGLVVSPHPYNEMMKLYIATCEYRKVPLVIEQMKRNKVPYNVLSYNLWMNACGEGEGEGYGVAAVEKVFRVMQNDENIEVGWSSLATLANVYMKAGQFDKAILVLKNAEKKLSNCNRLGYFFLITLYASLNEKEGVLRLWEASKAVGGRISCANYICILTCLVKLGDIVEAERIFMEWESNCLKYDIRVSNVLLGAYVRKGSMEEAESLHLHTLHKGGCPNYKTWEILIEGYVNGQRMDEAVIAMKRALAMLKDCHWRPPHGLVLAIAEYLEKQMNFEYANEYITNIHNFGLVSLSLCKILLRMHLSANKPPFHILKMMEEGKVEMDDETLSILKAFIGLKCLENLKNRMGTNQPKDEKLQFLSV* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01742 532 PANTHER OS12G0527900 PROTEIN 32 493 - -
Rops10g01742 532 SUPERFAMILY HCP-like 254 454 - -
Rops10g01742 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Rops10g01742 532 Pfam Pentatricopeptide repeat domain 169 221 IPR002885 -
Rops10g01742 532 Gene3D Tetratricopeptide repeat domain 250 526 IPR011990 GO:0005515
Rops10g01742 532 Gene3D Tetratricopeptide repeat domain 46 225 IPR011990 GO:0005515
Rops10g01742 532 Pfam PPR repeat 358 377 IPR002885 -
Rops10g01742 532 Pfam PPR repeat 322 348 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01742 Rops-Chr10 32556868 32560750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01742 43 426 EF-hand Containing Proteins AT1G02150 32.990 1.45e-71 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01742 - - gmx:100813805 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01742 10 32556868 32560750 Rops10g01742 10 32556868 32560750 ECH