Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01729 ATGCACGGTCGTCCTCGCAAAGCTTCTAAGGAAGAAGATGCAGCTGCTTTATCAGCCAAAGCTGAAAAGCTTCGTGCTCTTCAATCTCAGTTCCTCTCCAATCACCATAATCACATATACAGCAAGGAAGCACTAGATTTGAGCGCGAAGCTTCTAGAAGTTAATCCAGAATGTTACACAGCTTGGAATTACAGAAAACTCGCCGTTCAACACTTCCTCTCTCACTCCGATTCCAATTCCGATCCTCAATCTGTCTCATCTCTCCTTGATGAGGAACTCAAAGTGGTGGAGAATGCGTTGAGGAAGAATTTCAAGTCTTATGGTGCCTGGCATCATAGAAAATGGGTACTAAGCAAGGGACATTCATCCATAGATAACGAATTGCGCCTTCTCAATGGTTTTCAGAAGGCTGATCCTCGAAATTTTCACGCATGGAATTACCGAAGGTTTGTTGCTGAACTGACGAAACGATCAGATGAGGAGGAGTTGAAATACACAGAGGAAGTGATAGGGGCTAATTTTAGTAATTACTCGGCATGGCACAATCGGAGTATGATTTTGTTTAATTTACTGAAAAGAAAGGCCGAAGGATATTTCCCTAAAGAAAAAGTTCTGAAAGAGGAGTACGAGCATGTCCACAATGCTTTTTTTACTGATCCAGATGATCAGAGTGGCTGGTTTTATCATCTTTGGCTTATTGATCAAACAGTGAGAACAGATGCTCCTCTGCTTGTTTCATCTTGGCCTTCTCATGGATCTGATATCACCCTAAATGGAAACAAATGCCTTCATAGTTGTGGTTTGTCTCAATTGAATAGTACACTATCAGACACTGGCATACTTCCGGTCATTCTTTATTTCAATCAAACTGTTGAAGGCATAAACTCATCAACTGTGGCTGTTAAATCTGAATTTTTAAAGGAGGATCTTGTTTGGAAACCACTGACAACAAACAACTCAAATACTGCTCAAGTTTGGGTTTTGTATCTGAACCTTGGAAATATGGAGCTCCAACCGTTGAAAACTTACTCCGTAGAGATCAGCATTGGGCATTCTAATGGTATTGTATCTTCAAGCGGGTATCATTATGGCGATCCTTCCCAAATTGCATTTAAAGTGCGTGCACAGACTGCTTATACAGAACCCGCTGAAGGACAGGGTGGAAAAATGATTTCGTGGAAAGATAAAGATTTCCAAAAAATTGATCATTTTCAGGAATCGGACTCCATTGTTTCTGCTAATCAACTAATCACTGAGAATCGCCATATTAAAACAACTTCCAATTGGTGCATGGAGCAAATTGCGGATGAAATAACTAATTTTCAGGATTTATTGTCAGAGTATGACTGTAAAATTGGAAAGCTTACACTTGCAAGACTTTTGACTGCTCTTGATTTATTATCATCTCAACATGATTATAGAAAATCTCATACTGAAGAAATTCTTCAACTTTACACTGATCTGATGAAGTTGGATCCAACACATACTCAATACTACAAGGATGAGCATAGTCTGATATTACTTAAGCAGATAACTTCAACTAGGGAGTCTTTACTATCATACTGCCACTATTATAAAGATGCAACAGAAACAATTAGTGGTTATGTCTGTCTACGATTACAAAATCTGTCATTGTCACGGATGGGATCCATTGAGAATTTATTGTGGGTGCAAATGCTTGACCTTAGCCACAATGAACTTCGATCACTTGAAGGGTTGGAGGCCATGCAACTTCTATCTTGCTTAAATCTGAGTCATAATAAATTTGGTAGTTTTACTGCTCTGGGGCCTCTCAGATTGCTCAAGTCACTTAAAGTGTTGAATATCTCATACAATGAGTTAGGCTCTCACTCAGTTGACACAACAAGATACCGATGCTCTTCTCCTTTAGCTCATACTGAAGAATTTGCCTGGGACCGTTTTGAAATCCTCACCGGCAGCATTGATGCCACAAATTTTTGGGAAGCTTTCTTGATATTTGAAAGCTTGAACTTGACAGAGTTGGACATAACAGGGAATGCAGTTGCGGATGAGAACTTCAGGTCATTTATTGTCAAAGTTTTGCCTACACTAAAGTGGCTAGATGGTGAAGCATTGTCTTGA 2103 0.3961 MHGRPRKASKEEDAAALSAKAEKLRALQSQFLSNHHNHIYSKEALDLSAKLLEVNPECYTAWNYRKLAVQHFLSHSDSNSDPQSVSSLLDEELKVVENALRKNFKSYGAWHHRKWVLSKGHSSIDNELRLLNGFQKADPRNFHAWNYRRFVAELTKRSDEEELKYTEEVIGANFSNYSAWHNRSMILFNLLKRKAEGYFPKEKVLKEEYEHVHNAFFTDPDDQSGWFYHLWLIDQTVRTDAPLLVSSWPSHGSDITLNGNKCLHSCGLSQLNSTLSDTGILPVILYFNQTVEGINSSTVAVKSEFLKEDLVWKPLTTNNSNTAQVWVLYLNLGNMELQPLKTYSVEISIGHSNGIVSSSGYHYGDPSQIAFKVRAQTAYTEPAEGQGGKMISWKDKDFQKIDHFQESDSIVSANQLITENRHIKTTSNWCMEQIADEITNFQDLLSEYDCKIGKLTLARLLTALDLLSSQHDYRKSHTEEILQLYTDLMKLDPTHTQYYKDEHSLILLKQITSTRESLLSYCHYYKDATETISGYVCLRLQNLSLSRMGSIENLLWVQMLDLSHNELRSLEGLEAMQLLSCLNLSHNKFGSFTALGPLRLLKSLKVLNISYNELGSHSVDTTRYRCSSPLAHTEEFAWDRFEILTGSIDATNFWEAFLIFESLNLTELDITGNAVADENFRSFIVKVLPTLKWLDGEALS* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01729 700 PRINTS Leucine-rich repeat signature 557 570 - -
Rops10g01729 700 PRINTS Leucine-rich repeat signature 601 614 - -
Rops10g01729 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 204 238 IPR002088 GO:0008318|GO:0018342
Rops10g01729 700 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 2 510 - -
Rops10g01729 700 FunFam Geranylgeranyl transferase type-2 subunit alpha 1 248 - -
Rops10g01729 700 FunFam Rab geranylgeranyl transferase like protein 515 700 - -
Rops10g01729 700 Gene3D Ribonuclease Inhibitor 645 700 IPR032675 -
Rops10g01729 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 88 122 IPR002088 GO:0008318|GO:0018342
Rops10g01729 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 158 192 IPR002088 GO:0008318|GO:0018342
Rops10g01729 700 Gene3D Ribonuclease Inhibitor 500 627 IPR032675 -
Rops10g01729 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 123 157 IPR002088 GO:0008318|GO:0018342
Rops10g01729 700 Pfam Leucine Rich repeat 663 678 IPR001611 GO:0005515
Rops10g01729 700 Coils Coil 7 27 - -
Rops10g01729 700 ProSiteProfiles Leucine-rich repeat profile. 556 577 IPR001611 GO:0005515
Rops10g01729 700 SUPERFAMILY L domain-like 530 615 - -
Rops10g01729 700 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318|GO:0018342
Rops10g01729 700 Gene3D Protein prenylyltransferase 1 248 - -
Rops10g01729 700 Pfam Protein prenyltransferase alpha subunit repeat 89 118 IPR002088 GO:0008318|GO:0018342
Rops10g01729 700 Pfam Protein prenyltransferase alpha subunit repeat 160 189 IPR002088 GO:0008318|GO:0018342
Rops10g01729 700 Pfam Protein prenyltransferase alpha subunit repeat 205 235 IPR002088 GO:0008318|GO:0018342
Rops10g01729 700 Pfam Protein prenyltransferase alpha subunit repeat 42 71 IPR002088 GO:0008318|GO:0018342
Rops10g01729 700 Pfam Protein prenyltransferase alpha subunit repeat 125 151 IPR002088 GO:0008318|GO:0018342
Rops10g01729 700 SUPERFAMILY Protein prenylyltransferase 11 503 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01729 K14050 - gmx:100807900 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01729 10 32278298 32283382 Rops10g01729 10 32278298 32283382 ECH