Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01728 ATGCCCACTAACGAAGACTTCCAAGGTGTTTCAAATTGTTACGTGTTCAAGAGCAGATTGCAGGAGTATGCTCAGAAGGCAGGAGTCCCTACACCTGTCTATGAAACTATCAAGGAAGGGCCTTCCCATGAACCTTCATTCAGGTCAACAGTGATAGTGAATGATGTTCGGTATGATTCTTTGCCTGGATTTTTCAACCGTAAAGCGGCAGAGCAGTCAGCTGCAGAAGTTGCCTTGGCGGAGTTGGCCAAATCTGATGAAGTTAATCGATCCATCACTCAACCTGTTCATGAAACCGGATTATGCAAGAATTTACTTCAGGAATATGCACAAAAGATGAATTATGCAATGCCTATGTATCATTGCAAAAAGGATGAAACACCAGGTCGAACACCAGTGTTTTCATGTACAGTTGACATTGGGGGGATTCTCTACATCGGGGGAGCAGCAAAAACAAAGAAGGAAGCAGAGATAAAAGCCGCCAGAACTGCTTTACTAGCTATCCAGTCAAGTGCATCTCAAGCTTCCCAAAACCAGTTTGGTCATTCACAGTTGACAGTCATTCCATGCAGAAAAAGGGCAACAGAATCTGTTCCCCAAGCTGATGAGACTTCAAATGCCCCAAAGCCTAAGAAACCACGGTTTAAAAGGAAATCTTCCAAGAGGAAACCCTCTAGAGATAAGATGGGCCATGTTCATGCTGAAAACGTGGGTGCTGGAGCAAATATCAATCATGAGGTAGAACCACATGCAAGTGTCGATGCTGAATCTGGCATCCAGGAAGTGAAATCCGAAGCACTCACTTCAGAAGGCATGAAGAATTCTGAGAATGGAATATCAGTTAATTATCATGAGAAAGAAACATTGGCTGGGGAGGGTGTTTTGGCTCTGAATAGCCAAGGGACTTTTGAAAATGGGAAGTCAACGGAATCACATTCCCAAGAGAACAATCTTGGGGCTGATGGAGACATACCGGAAATCAGCGTGGAGATGAACAAACAACAGTATAATGGAGAAATGGTCTCTGACAAATAA 1035 0.4367 MPTNEDFQGVSNCYVFKSRLQEYAQKAGVPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALAELAKSDEVNRSITQPVHETGLCKNLLQEYAQKMNYAMPMYHCKKDETPGRTPVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASQASQNQFGHSQLTVIPCRKRATESVPQADETSNAPKPKKPRFKRKSSKRKPSRDKMGHVHAENVGAGANINHEVEPHASVDAESGIQEVKSEALTSEGMKNSENGISVNYHEKETLAGEGVLALNSQGTFENGKSTESHSQENNLGADGDIPEISVEMNKQQYNGEMVSDK* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01728 344 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 15 84 IPR014720 -
Rops10g01728 344 SMART DRBM_3 102 169 IPR014720 -
Rops10g01728 344 SMART DRBM_3 16 83 IPR014720 -
Rops10g01728 344 MobiDBLite consensus disorder prediction 298 318 - -
Rops10g01728 344 FunFam double-stranded RNA-binding protein 1 13 89 - -
Rops10g01728 344 SUPERFAMILY dsRNA-binding domain-like 15 82 - -
Rops10g01728 344 MobiDBLite consensus disorder prediction 252 344 - -
Rops10g01728 344 SUPERFAMILY dsRNA-binding domain-like 103 170 - -
Rops10g01728 344 CDD DSRM_AtDRB-like_rpt2 100 169 IPR044451 GO:0003725
Rops10g01728 344 MobiDBLite consensus disorder prediction 196 232 - -
Rops10g01728 344 FunFam Double-stranded RNA-binding protein 1 95 170 - -
Rops10g01728 344 PANTHER RIBONUCLEASE III 13 230 IPR011907 GO:0003723|GO:0004525|GO:0006364
Rops10g01728 344 Gene3D - 16 97 - -
Rops10g01728 344 MobiDBLite consensus disorder prediction 262 282 - -
Rops10g01728 344 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 101 170 IPR014720 -
Rops10g01728 344 MobiDBLite consensus disorder prediction 330 344 - -
Rops10g01728 344 Gene3D - 98 170 - -
Rops10g01728 344 MobiDBLite consensus disorder prediction 211 227 - -
Rops10g01728 344 Pfam Double-stranded RNA binding motif 17 82 IPR014720 -
Rops10g01728 344 Pfam Double-stranded RNA binding motif 103 166 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01728 Rops-Chr10 32274275 32277411 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01728 - - gmx:100782651 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01728 10 32274275 32277411 Rops10g01728 10 32274275 32277411 ECH