Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01644 ATGGCTGTTTCAACCACTTTCTCGGGTGCAAAGTTGGAGGCTTTATTGCTCAAACGTTGTTCCTCTTCACGGGCATCATTATCCACTGCTACCCATTTACCAGTTCCTGGCAAAAACAGAAGAACCCTCATTCATAAAGGGGTTATTCGCTGTGATGCTCAGGCTTCTGATGTGTTGGTTAAGGACGATGGTCCAAGCAATGCTTCCACTCTCTCCGCTCTTGAGCAATTGAAGACTTCTGCAGCTGAGAGGTATACGAAGGAAAGGAGCAGCATTGTCGTCATAGGGCTCAGTGTGCACACTGCACCTGTGGAAATGCGTGAAAAACTTGCCATTCCAGAAGCAGAATGGCCTAGAGCCATCGCAGAGCTGTGTAGTCTTAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACCGAATGGAGATATATGTTGTCGCTCTGTCCCAACACCGTGGTGTCAAAGAAGTCATGGAATGGATGTCAAAAACAAGTTCCGTCCCTGTTTCAGAGCTTTGCCAGCACCGGTTTTTACTTTACAACAAAGATGCCACACGGCATCTTTTTGAAGTATCAGCGGGTCTCGACTCTCTTGTATTGGGAGAAGGTCAAATCCTTGCTCAGGTCAAGCAAGTTGTCAAAGTTGGACAAGGAGTTAATGGCTTTGGGAGAAACATTAGTGGGCTATTCAAGCATGCAATTACTGTTGGAAAAAGGGTTAGAACTGAGACTGATATTTCTGCCGGGGCAGTTTCTGTTAGTTCAGCTGCCGTTGAATTGGCCTTGATGAAGCTACCTGAAGCCTCGCATGATAATGCTAGGATGTTGGTTATCGGTGCTGGCAAGATGGGAAAGCTTGTAATCAAACATTTGGTGGCAAAAGGTTGCAGGAAGATGGTTGTTGTCAATAGAACAGAGGAGAGAGTTGCTGCAATACGTGAAGAACTGAAGGATGTTGAAATAATTTACAAACCCCTTTCAGAAATGCTCGCCTGTGCCGGCGAAGCAGATGTACTTTTCACCAGTACAGCATCTGAAAGCCCATTATTCTTAAAAGATCACGTCAAGGACCTTCCTCCTGCAAGTCAAGATGTTGGAGGCCGTCGCTTTTTCATTGATATCTCTGTTCCTCGGAATGTGGGTTCATGTGTCTCAGATCTTGAGTCTGTGCAAGTTTACAACGTTGATGACCTTAAAGAGGTTGTGGCTGCCAATAAAGAGGATCGACTAAGAAAAGCAATGGAAGCGCAGGCAATCATTGGCGAAGAATTAAAACAATTCGAAGCTTGGAGGGACTCACTGGAAACTGTTCCTACTATTAAGAAATTGAGGGCTTATGCGGAAAGAATCAGGATGGCTGAGCTTGAGAAATGCTTGGGTAAGATGGGTGATGATATCTCAAAGAAGACCCGGAGAGCTGTGGATGATCTTAGTCGGGGTATTGTGAATAGGTTGCTTCATGGTCCAATGCAACATTTAAGATGTGATGGAAGTGACAGCCGGACCCTAAGTGAGACCCTTGAGAACATGCATGCTTTGAATAGAATGTTCAGCCTTGAGACTGAAATATCTGTTTTGGAGCAGAAGATTAGAGCAAAGGTGGAACAAAACCAGAAGTGA 1623 0.4504 MAVSTTFSGAKLEALLLKRCSSSRASLSTATHLPVPGKNRRTLIHKGVIRCDAQASDVLVKDDGPSNASTLSALEQLKTSAAERYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVMEWMSKTSSVPVSELCQHRFLLYNKDATRHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETDISAGAVSVSSAAVELALMKLPEASHDNARMLVIGAGKMGKLVIKHLVAKGCRKMVVVNRTEERVAAIREELKDVEIIYKPLSEMLACAGEADVLFTSTASESPLFLKDHVKDLPPASQDVGGRRFFIDISVPRNVGSCVSDLESVQVYNVDDLKEVVAANKEDRLRKAMEAQAIIGEELKQFEAWRDSLETVPTIKKLRAYAERIRMAELEKCLGKMGDDISKKTRRAVDDLSRGIVNRLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEISVLEQKIRAKVEQNQK* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01644 540 Hamap Glutamyl-tRNA reductase [hemA]. 91 518 IPR000343 GO:0008883|GO:0033014|GO:0050661
Rops10g01644 540 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 95 245 IPR015895 GO:0008883|GO:0033014|GO:0050661
Rops10g01644 540 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 414 500 IPR036453 GO:0008883|GO:0033014|GO:0050661
Rops10g01644 540 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 91 247 IPR036343 GO:0008883|GO:0033014|GO:0050661
Rops10g01644 540 FunFam Glutamyl-tRNA reductase 250 409 - -
Rops10g01644 540 CDD NAD_bind_Glutamyl_tRNA_reduct 92 414 - -
Rops10g01644 540 Gene3D - 251 403 - -
Rops10g01644 540 Coils Coil 303 323 - -
Rops10g01644 540 NCBIfam glutamyl-tRNA reductase 92 500 IPR000343 GO:0008883|GO:0033014|GO:0050661
Rops10g01644 540 ProSitePatterns Glutamyl-tRNA reductase signature. 188 211 IPR018214 GO:0008883
Rops10g01644 540 FunFam Glutamyl-tRNA reductase 91 250 - -
Rops10g01644 540 Gene3D - 90 250 IPR036343 GO:0008883|GO:0033014|GO:0050661
Rops10g01644 540 Pfam Shikimate / quinate 5-dehydrogenase 260 402 IPR006151 -
Rops10g01644 540 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 416 520 IPR015896 GO:0008883|GO:0033014|GO:0050661
Rops10g01644 540 Coils Coil 524 540 - -
Rops10g01644 540 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 250 410 IPR036291 -
Rops10g01644 540 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01644 Rops-Chr10 30192621 30196188 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01644 K02492 - gmx:100782247 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01644 10 30192621 30196188 Rops10g01644 10 30192621 30196188 ECH