Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01638 ATGGCGTCGTTTCGACGGACTCTATCGCCGGGGTATCACGAACGCCAATACCTAAACGGCACGTTTTCAGTGTCGTCTCCAACTCAGAAGCTTCCATCATCTAACGGCAACTACTCGGCGCTGGCGGCGTTGTTCCGGCGAGCAGCCGGCGGCGTTTTGATGCGACGGTACGGTAGAAAGGGACAGTGGAGAAAAGCAGCGTACAGGTGCGTGCTTTGTTTCTTCGTAGGGTTCTTGTTAGGGATGTTCCCTTTCGGTCACGTGGTAGAAGACATTCGAACACAGGACATGTCTTTCGAGATGAAACCTCCTCACGCAAACGCGCAATTGCTTAGTGAGGATCGCGTTTCGAAGAATCGCGTCGGTGACGCGGGTTTTATAATCGATCCAATTAGTTTGAGTGCTGAGAAGGAGAGTAAGAGTTCGGAGGTTACTGAGAGATTCGATTTCGTGCCGAGGAAGCAGTTGATTGTGGTGAGTCCGACTTACAATCGCGCTTTTCAGTTTTATTTTTTGAATAGGTTGGGTCAGGTTTTGCGTTTGGTGTCGCCTCCGATTCTGTGGATTGTGGTGGAATCGAAGTCGGCTTCGATGGAGACTGCTGAGTTGTTGAGGAAAACGGGTGTGATGTATAGGCATTTGGTGTGTACTAAGAACAGCACTGATGTGAAGGATAGAGGGGTTCATCAGAGGAATACTGCTTTGGAGCATATTGAGCATCATAGACTTGATGGGATTGTTTACTTTGCAGATGATGATAATGTATATTCTCTCGAGTTGTTTGAGACCTTGAGAGATATCAGTCGATTTGGCACTTGGCCCGTTGCCATGCTTGCACCAAGCAAGAACAAGGCTATTTTGGAGGGTCCTGTCTGCAATGCAAGCACAATCTTATGGGATCCAAAGCGATGGCGGCGCCCTACTTCCAATCCTATACGGCAATTAGATACAGTGAAGGAGGGTTTTCAAGAGACTTCTTTTATAGAACAATTGGTGGAAGATGAGAGTCAAATGGAAGCTTCACCTCCTGGTTGTTTGAAAATAATGAATTGGCATCTCCATTTGGGTGCTCATAATATAGTTTATCCAAAGGGTTGGATGCTTCAGAAAAACCTTGACGCTGTCATACCCATCAATTTGCCCATATTTGGTATTGGTTCATCACTGAATAGATGGGTACATCAGTTAGCCACCGTTGGCACTAATGCATTATGTCACCCGGCAAGACAGGAACAGGACGAATGGCGAAGGAAAAATTAA 1260 0.4667 MASFRRTLSPGYHERQYLNGTFSVSSPTQKLPSSNGNYSALAALFRRAAGGVLMRRYGRKGQWRKAAYRCVLCFFVGFLLGMFPFGHVVEDIRTQDMSFEMKPPHANAQLLSEDRVSKNRVGDAGFIIDPISLSAEKESKSSEVTERFDFVPRKQLIVVSPTYNRAFQFYFLNRLGQVLRLVSPPILWIVVESKSASMETAELLRKTGVMYRHLVCTKNSTDVKDRGVHQRNTALEHIEHHRLDGIVYFADDDNVYSLELFETLRDISRFGTWPVAMLAPSKNKAILEGPVCNASTILWDPKRWRRPTSNPIRQLDTVKEGFQETSFIEQLVEDESQMEASPPGCLKIMNWHLHLGAHNIVYPKGWMLQKNLDAVIPINLPIFGIGSSLNRWVHQLATVGTNALCHPARQEQDEWRRKN* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01638 419 CDD GlcAT-I 156 355 IPR005027 GO:0015018|GO:0016020
Rops10g01638 419 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 154 296 IPR029044 -
Rops10g01638 419 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 297 374 IPR029044 -
Rops10g01638 419 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 295 375 IPR005027 GO:0015018|GO:0016020
Rops10g01638 419 Pfam Glycosyltransferase family 43 175 295 IPR005027 GO:0015018|GO:0016020
Rops10g01638 419 SUPERFAMILY Nucleotide-diphospho-sugar transferases 155 372 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01638 Rops-Chr10 30103108 30107125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01638 1 378 Glycosyltransferase AT1G27600 55.528 1.49e-151 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01638 K20869 - gmx:100809892 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01638 10 30103108 30107125 Rops10g01638 10 30103108 30107125 ECH