Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01627 ATGACGTCTTCTAAGAGACCAAATTCAGAGTCAAATGGGAAAGGTAAACGTAAAAAATCTTCAAGCGGTTATTCACCGTTAGATGTATCTGCTGGGAGTGTTATCTTCCGTTTGTTATGCCCTGCTTCAAGAATTGGTGGTGTTATTGGTAAAGGTGGTGCCATAGTATCACAAATTCGACAGGAAACCGGTGTTAAGGTTAAGATTGAGGAACCTGTTCCGGGCTGCGACGAAAGAGTTATTACTATCTTAGGTTCCGATAAAGATACTGAAGAAGATGCCTCTGAGAAAGGAAGGGATGTTAATAATGATGAGGGTGAGAGCAAGGGGAAGGATGATGAGGTGAAAGGTAATGGTGACAGTGATGAGAATAAAGATTCGGTTCCGGTTGAAGAGTCGTCGCCGGGTGAGAAGGGAAATTCGTCTATTCGGAAAGCGCTATCACTGGTTTTTGAGAGGATGGTTGAAGGAATAGAGGATAAAAGTGAAGGTGATGAAGAAAGTAATAAATCTCCTTCCTTGGTTTTCAGGCTACTTGTGCTTTCTAGTCAAGTCGGATGCCTTCTGGGAAAGGGTGGTAGTGTAATAAAGAAAATGTCAGCTGAAAGTGGCGCGCAGATTCGGATCCTTCCTAGAGACAAACTTCCACTGTGTGCATCGGCTTCTGATGAGATAGTTCAGATCACGGGGGGAGTTGAAGTTGTCAGGAAAGCTCTTCAATCTGTTTCTCAACAGCTTTTGGAAAATCCACCTCGGGATCATGAACCTCAGTCTGCGAATTTTACCGGGCCATCATCTCACTCATTTGGTCAATTTCCTCCACACAACCGTTCCTTTGCTGCTCAAGGAGCACCTTTTGCTGCTGGACCTCATGATATTTCCATCTTCCATTCTGCTCCTCCCCTGATTCCCAAATTTCATGAAGGTGCCATCCATCGTCGCATGAGGCCTCCACAGGAAACGCTTACTTTTCGTTTGTTGTGTCCTGTTGAAAGGGTAGGAAATTTAATTGGTAAAGGTGGAGCAATCATAAAGACTCTGCAGCAAGAGACAGCTAGTGAAATCAAGGTTGTAGAAGGAAGCTTGGATTCAGAGGACTGCATTGTTGTCGTATCTGGTCCAGCGCACCCAGACGATAGAATATCTCCTGTGCAAGAGGCTGTATTTCGTGTGCAAACTAGAATTGCCAAGGTTATACCTGATGCCAAAGAGCATAGTATGTTAGCAAGGATTCTTGTTTCTTCTAATCAAATAGGTTGTCTCCTTGGCAAGGGTGGTTCCATCATAACTGAAATGAGGAAATTATCAGGGGCCCATATCCGTATATTAGGAAAGGATAAGGTTCCAAAGTGTGCTTCAGAAGATGAAGAAGTGATTCAGGTAAGTGGAGAAATTGAGGCAGTGCACGATGCTCTTTTGCAAATAACCACTAGACTAATTCACCATTTCTTTCGTGATGCATATCCATCTGTCAATTATCCTTCAAATTCTGCATTTATGGATCAACTTCCTCCATTCCCACCTTATTTGGGAAGGCGGGGGATTTCACCTCCTGGAATGTATTCTGACCTAGGTCCTCCACCTCCACATGTGGGTTTTCCCCTTGATGATCGCCCTCCTTTTATGAGTAATATACATAGACCCGGCATTCCTCCTCACATATCTGAAAGGAAGCCTTGGGGTCCTCAGGGGATACTTGAAGGTGGTGGACCTATGGGCTTGCCAGACTTTGCAGGAGGTCCTCCTCGGAGAATTTCAGGACTTGCAGGAGGGAGCCAACCAATCATCACAAGTACCACTGTTGAAGTTGTTGTTCCTCGAGCATTGGTGCCTGTAATATATGGGGAAGATGGTGAATGCCTGAAACAAATACTTCAGATCTCTGATGCAAATATCACGATTACTGATCCAAAGCCTGGAGCTGTGGAAACTAAAATTATAATATCTGGAACCCCAGAGCAAACTCATGCTGCACAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAATCTGGTTGA 2022 0.4431 MTSSKRPNSESNGKGKRKKSSSGYSPLDVSAGSVIFRLLCPASRIGGVIGKGGAIVSQIRQETGVKVKIEEPVPGCDERVITILGSDKDTEEDASEKGRDVNNDEGESKGKDDEVKGNGDSDENKDSVPVEESSPGEKGNSSIRKALSLVFERMVEGIEDKSEGDEESNKSPSLVFRLLVLSSQVGCLLGKGGSVIKKMSAESGAQIRILPRDKLPLCASASDEIVQITGGVEVVRKALQSVSQQLLENPPRDHEPQSANFTGPSSHSFGQFPPHNRSFAAQGAPFAAGPHDISIFHSAPPLIPKFHEGAIHRRMRPPQETLTFRLLCPVERVGNLIGKGGAIIKTLQQETASEIKVVEGSLDSEDCIVVVSGPAHPDDRISPVQEAVFRVQTRIAKVIPDAKEHSMLARILVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKVPKCASEDEEVIQVSGEIEAVHDALLQITTRLIHHFFRDAYPSVNYPSNSAFMDQLPPFPPYLGRRGISPPGMYSDLGPPPPHVGFPLDDRPPFMSNIHRPGIPPHISERKPWGPQGILEGGGPMGLPDFAGGPPRRISGLAGGSQPIITSTTVEVVVPRALVPVIYGEDGECLKQILQISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERESG* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01627 673 CDD KH-I_PEPPER_rpt2_like 408 479 - -
Rops10g01627 673 ProSiteProfiles Type-1 KH domain profile. 173 242 - -
Rops10g01627 673 Gene3D K Homology domain, type 1 32 97 IPR036612 GO:0003723
Rops10g01627 673 Pfam KH domain 176 242 IPR004088 GO:0003723
Rops10g01627 673 Pfam KH domain 410 475 IPR004088 GO:0003723
Rops10g01627 673 Pfam KH domain 323 375 IPR004088 GO:0003723
Rops10g01627 673 Pfam KH domain 600 663 IPR004088 GO:0003723
Rops10g01627 673 Pfam KH domain 36 91 IPR004088 GO:0003723
Rops10g01627 673 ProSiteProfiles Type-1 KH domain profile. 598 662 - -
Rops10g01627 673 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 319 662 - -
Rops10g01627 673 CDD KH-I_PEPPER_rpt2_like 175 246 - -
Rops10g01627 673 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 28 89 IPR036612 GO:0003723
Rops10g01627 673 Gene3D K Homology domain, type 1 404 482 IPR036612 GO:0003723
Rops10g01627 673 Gene3D K Homology domain, type 1 171 251 IPR036612 GO:0003723
Rops10g01627 673 ProSiteProfiles Type-1 KH domain profile. 33 98 - -
Rops10g01627 673 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 404 486 IPR036612 GO:0003723
Rops10g01627 673 CDD KH-I_PEPPER_rpt1_like 321 389 - -
Rops10g01627 673 ProSiteProfiles Type-1 KH domain profile. 321 388 - -
Rops10g01627 673 CDD KH-I_PEPPER_rpt1_like 34 92 - -
Rops10g01627 673 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 322 399 IPR036612 GO:0003723
Rops10g01627 673 MobiDBLite consensus disorder prediction 1 26 - -
Rops10g01627 673 MobiDBLite consensus disorder prediction 82 132 - -
Rops10g01627 673 Gene3D K Homology domain, type 1 318 397 IPR036612 GO:0003723
Rops10g01627 673 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 164 252 IPR036612 GO:0003723
Rops10g01627 673 SMART kh_6 320 400 IPR004087 GO:0003676
Rops10g01627 673 SMART kh_6 172 247 IPR004087 GO:0003676
Rops10g01627 673 SMART kh_6 597 667 IPR004087 GO:0003676
Rops10g01627 673 SMART kh_6 32 102 IPR004087 GO:0003676
Rops10g01627 673 SMART kh_6 405 480 IPR004087 GO:0003676
Rops10g01627 673 MobiDBLite consensus disorder prediction 78 142 - -
Rops10g01627 673 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 598 667 IPR036612 GO:0003723
Rops10g01627 673 ProSiteProfiles Type-1 KH domain profile. 406 475 - -
Rops10g01627 673 Gene3D K Homology domain, type 1 597 670 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01627 Rops-Chr10 29882837 29892481 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01627 K21444 - gmx:100785136 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01627 10 29882837 29892481 Rops10g01627 10 29882837 29892481 ECH