Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01609 ATGGTGGGTTCCGATGGTACCAACGGTGGTGGTTCTACACCGCCACCGCCACCGCCACCGCCACCTCCACCTCAACAAGAACAAGCCAACAACAATTTTGGGTTTACAAAGCCCATCTCTCTTGCGGGTCCCACCGATGCTGATCTTCAACGTAACCTCGAATTGGAGAAGTTTTTGCTTGATTCTGGGCTTTACGAGAGCAATGAAGAAGCTGCAACCAGACAAGAGGTTCTTCACCGCCTTGATCAGATTGTGAAAAACTGGGTGAAGCAGTTGACCCGCCAACGAGGCTACACAGATCAGATGGTTGAAGATGCAAATGCTGTCATTTTCACTTTTGGCTCTTATCGACTAGGGGTTCATGGACCTGGAGTTGACATAGACACTTTGTGCATTGGTCCTTCTTATGTGAATCGAGAGGAAGACTTCTTTATCATTTTGCACAACATCCTGGCTGAAATGGAAGAAGTTACTGAACTTCAACCAGTTCCTGATGCACATGTCCCAGTAATGAAATTCAAGTTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCTCTTTTGGTTGTGCCAGAGGACCTGGATATCTCACAAGGTTCCGTGCTGCATGATATTGATGAACCAACTGTTCGAAGTCTTAATGGCTGCCGGGTGGCAGATCAAATTCTCAAACTTGTTCCAAATGTTGAGCACTTCCGAACTACACTGAGATGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTATATTCAAATGTTACTGGATTCCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAGTGTGCCAGCTTTACCCTAATGCAATCCCTAGTATGTTGGTTTCTCGATTCTTCAGGGTGTATACACAGTGGAGGTGGCCAAACCCTGTGATGCTATGCTCTATAGAAGAGAATGAACTGGGTTTCCCCATATGGGATCCTCGTAGAAACCCCCGGGACAGATTTCACATTATGCCAATAATTACTCCTGCATACCCGTGCATGAATTCCAGCTACAATGTCTCTGCAAGCACTCTTCGTGTTATGATGGAACAGTTCCGTTATGGCAACAAGATTTGTGACGAAATTGAGCTCAACAAAGCCCAGTGGAGTGCACTTTTTCAGCCATATGTCTTTTTTGAGGCATACAAAAACTATTTACAAGTGGACATAATTGCAACAGATGCTGATGATTTACTAGCATGGAAGGGTTGGGTAGAATCTCGGTTGAGACAGCTTACCCTGAAGATAGAGCGAGATACAAATGGGATGCTGCAGTGTCATCCTTATCCACATGAATATGCAGACACATCCAAGTCTTGTGCACATTCTGCTTTTTTCATGGGCTTGCAAAGAAAAGAGGGAGTGAGAGGTCAAGAGGGGCAGCAATTTGATATTCGTGGAACGGTTGATGAATTCAGACAAGAAATAAATATGTATGTGTACTGGAAGCCAGGGATGGAAATTTATGTTTCTCATGTTCGTCGAAAGCAGCTCCCTGCATTTGTTTTTCCTGATGGTTACAAACGCATTCGAATGTCAAGGCATATAACTCATCCATCTGAAAAAGTGGGTGATGATGCCACAAAGTGTAACTCTGGGTCTGGGTCCTCTGAAAGATGCATAAAGAGGAAAAATTACCCTGAAATGGTGGATGTGAGGCCAGGCAAACCAGAGAAGCGGGCATCTATTAGCCCACAAAGGCTAGAGTGTGTTTCTCCTGAAAGTTGTAGTACTAGTAAATCAGGTGGTACACCTCAAATGGGTGTTGAGTGTATTGAAGGGGTTAGGTTAGTTGGTTCAACAAGCAAGGATACTGACAGCAATTGTGAAATCAAGTCATCTGATGGATTCCTAGGAAATGGAATAAGTGCCGAAGTAGTTGACTTGCAGAATAGTGAAACAGGCTTTGTTGACTCCACACATGATGGGCTGAAATCAAGGAGTCTGGAAGTTAAGAATGAGAATGGAGACAATGGGGAAAATGCTCGGGATCTGGCTTTAGATTGCTTGGAAAGTGCAGAAACTGCATCTACCAAAAGCTTGCCAAGCCGTAAAGAGGGTGCTGTTGATATGGATCAACGATTAGACAAAGCTTGTCATTTCACAAGGGCTGAATGTTCAGATTTTGTACAAAGTGCCAGCACCCAGAACCTCAATTGCGAGATGTCAGACTCAAAAGTGTTGTATGAATTGAAGATGGGCCTAGGAGGATGA 2223 0.4399 MVGSDGTNGGGSTPPPPPPPPPPPQQEQANNNFGFTKPISLAGPTDADLQRNLELEKFLLDSGLYESNEEAATRQEVLHRLDQIVKNWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIILHNILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISQGSVLHDIDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHIMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIELNKAQWSALFQPYVFFEAYKNYLQVDIIATDADDLLAWKGWVESRLRQLTLKIERDTNGMLQCHPYPHEYADTSKSCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYVYWKPGMEIYVSHVRRKQLPAFVFPDGYKRIRMSRHITHPSEKVGDDATKCNSGSGSSERCIKRKNYPEMVDVRPGKPEKRASISPQRLECVSPESCSTSKSGGTPQMGVECIEGVRLVGSTSKDTDSNCEIKSSDGFLGNGISAEVVDLQNSETGFVDSTHDGLKSRSLEVKNENGDNGENARDLALDCLESAETASTKSLPSRKEGAVDMDQRLDKACHFTRAECSDFVQSASTQNLNCEMSDSKVLYELKMGLGG* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01609 740 SUPERFAMILY PAP/OAS1 substrate-binding domain 229 378 - -
Rops10g01609 740 SUPERFAMILY Formin homology 2 domain (FH2 domain) 14 24 - -
Rops10g01609 740 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 381 507 IPR011068 GO:0003723|GO:0016779|GO:0031123
Rops10g01609 740 Gene3D Beta Polymerase, domain 2 66 222 IPR043519 -
Rops10g01609 740 PANTHER POLY A POLYMERASE 23 540 - -
Rops10g01609 740 MobiDBLite consensus disorder prediction 1 41 - -
Rops10g01609 740 FunFam Poly(A) polymerase alpha, putative 66 222 - -
Rops10g01609 740 Pfam Poly(A) polymerase central domain 34 377 IPR007012 GO:0043631|GO:1990817
Rops10g01609 740 Gene3D Poly(A) polymerase predicted RNA binding domain 380 496 - -
Rops10g01609 740 FunFam Nuclear poly(A) polymerase 4 380 496 - -
Rops10g01609 740 CDD NT_PAP_TUTase 74 228 - -
Rops10g01609 740 MobiDBLite consensus disorder prediction 11 27 - -
Rops10g01609 740 FunFam Putative poly(A) polymerase gamma 197 376 - -
Rops10g01609 740 Pfam Nucleotidyltransferase domain 107 183 IPR002934 GO:0016779
Rops10g01609 740 SUPERFAMILY Nucleotidyltransferase 31 227 IPR043519 -
Rops10g01609 740 Gene3D - 34 376 - -
Rops10g01609 740 Pfam Poly(A) polymerase predicted RNA binding domain 439 512 IPR007010 GO:0003723|GO:0043631
Rops10g01609 740 Pfam Poly(A) polymerase predicted RNA binding domain 381 440 IPR007010 GO:0003723|GO:0043631
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01609 Rops-Chr10 29667526 29673340 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01609 K14376 - gmx:100819294 1276.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01609 10 29667526 29673340 Rops10g01609 10 29667526 29673340 ECH