Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01606 ATGAAGATGGGTGTTTGTGATTTCGCGGCTCTATCATGTTTCGCTCCTTCACTGTCGTGTGCTTCAACGCTTCTTCGTTCTCGCCTCAGAGTTCGGTGTTGTACTACTCTATCTGCTGCTTCTTCTTCACAGTCACAGAATCCTACTCCAACCTCATCTTCCGTAAAGAAACGAGTAGTGTCAGGAGTTCAGCCCACGGGCTCAATTCACCTTGGTAACTATTTTGGCGCCATCAAGAATTGGGTTTCCCTTCAGAATACATATGATACACTTTTCCTCATTGTGGACCTGCATGCGATTACATTACCTTATGACACACAACAATTATCTAAGGCTACAAGGTCAACTGCAGCCATTTACCTGGCATGTGGAGTGGATCCTTCAAAGGCTTCAGTTTTTGTACAGTCTCATGTTCGAGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCAATCGGTTGGCTTAACAAAATGATACAGTTTAAAGAGAAATCACGCAAGGCGGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGCGAAGATCAAAAGCAGCATTTGGAGTTGACCCGTGACTTAGCTGAACGGATTAATAATTTATATGGTGGAAGAAAATGGAAGAAGTTAGGAGGCCGAGGTGGTACTATATTTAAGGTACCAGAGCCCCTTATACCTCCAGCAGGAGCCCGAATTATGTCCCTAACTGATGGCCTGTCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCAAGAATCAATATTCTTGATCCGAAAGATCTTATAGCAAACAAGATTAAACGTTGCAAAACTGATTCATTTCCGGGCTTGGAATTTGACAATTCTGAGAGGCCTGAATGTAATAATCTTCTTTCTATCTACCAGCTCATTTCAGGAAAGACGAAAGAGGAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGCACATTCAAAACTCTTTTAACAGATTCCTTGATTGATCACTTGCATCCCATTCAGGTTCGCTATGAGGAAATCATGTCCGATTCAAGTTATTTAGATGGAGTTTTGGCAGAAGGTGCTAGAAATGCAGCAGATATAGCAGATGCTACGCTTCATAATGTTTACCAAGCAATGGGATTTTTTAGGAGACAGTGA 1197 0.4236 MKMGVCDFAALSCFAPSLSCASTLLRSRLRVRCCTTLSAASSSQSQNPTPTSSSVKKRVVSGVQPTGSIHLGNYFGAIKNWVSLQNTYDTLFLIVDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERINNLYGGRKWKKLGGRGGTIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPGLEFDNSERPECNNLLSIYQLISGKTKEEVVQECQNMNWGTFKTLLTDSLIDHLHPIQVRYEEIMSDSSYLDGVLAEGARNAADIADATLHNVYQAMGFFRRQ* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01606 398 Gene3D - 254 364 - -
Rops10g01606 398 PRINTS Tryptophanyl-tRNA synthetase signature 261 271 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Rops10g01606 398 PRINTS Tryptophanyl-tRNA synthetase signature 119 138 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Rops10g01606 398 PRINTS Tryptophanyl-tRNA synthetase signature 196 217 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Rops10g01606 398 PRINTS Tryptophanyl-tRNA synthetase signature 69 85 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Rops10g01606 398 SUPERFAMILY Nucleotidylyl transferase 57 394 - -
Rops10g01606 398 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 65 74 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops10g01606 398 FunFam Tryptophan--tRNA ligase 252 362 - -
Rops10g01606 398 FunFam Tryptophan--tRNA ligase, chloroplastic/mitochondrial 59 275 - -
Rops10g01606 398 Pfam tRNA synthetases class I (W and Y) 57 349 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops10g01606 398 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 22 394 - -
Rops10g01606 398 CDD TrpRS_core 58 346 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Rops10g01606 398 Hamap Tryptophan--tRNA ligase [trpS]. 56 395 IPR024109 GO:0004830
Rops10g01606 398 NCBIfam tryptophan--tRNA ligase 56 394 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Rops10g01606 398 Gene3D HUPs 59 393 IPR014729 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01606 K01867 - gmx:100780314 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01606 10 29600392 29609274 Rops10g01606 10 29600392 29609274 ECH