Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01605 ATGAATGAAGAGGAGAGAGAAAGATACCAGATTCAGCAGATTCGCCTGCTCGATCTCGAAGAGCTAGAAGATGAAGAAGTCGATCACCTTCTCCATCACCCTCGCTCACCCTCTCACTCTTCCGACGACGAACCACACTCTACCGATGGCGCTGCTGAATCATCCGGTGAATTCACTTTCAATACCTCTATAGCGTCTTTGCATACATATCTTGGTGATGTTGAAGACACACGCCACAGGTCGGCTTTCTTGGATGGCGGTGCTGTAGTGAACCTTCCACTGTTTTGTCTCCCAGGAGTTGTACTCTTTCCTGGGGCTACTCTTCCCCTCAGAGTTGTCGAGTCCTGTTTCGTGGCTGCTGTTGAGAGAGCTTTGAGTCAGGTTGACGTTCCTTACACCATTGGTGTGATTCGGATTCACAGGGATACTGCAAATCGTAGGATGAAATCAGCGAGCATTGGAACAACTGCAGAGATTCGACAATATGGGCGTCTAGAGGATGGTTCACTGAATGTGGTTACCCGTGGACAACAACGATTTCACCTAAGACGATGCTGGAATGATGTGGAAGGAGTGCCTTACGGGGAGATCCAAATTATTGATGAAGATATACCGTTAAGAACTCCGAGGGATGTTTTTGGAAAATTAGCACCATTAAGTAATGTGTGCTGTAGCCGTGACGTCTCACATACATTGTCTTCAAAGTATTCTCATGTTAAAATACGTGGATCAAACAATGGGGAAAATGATTCAGAAGCAAATTCAGATGACAGTTTTGAGAGTGAGCTTTCACTAAGGGAAAAAACAATCCCCCTATCAGTCAGTGGCTCCAGTTATGATGGTGATATGATGGATGAATCAACAAACGGCAATGATGTTAAATTCAAGCATAAGTCAGATCAGGAAATTAGATCCAATCTGGATTTGAGAACTGGTAACTGTTCCACTTCTGGAAAGCAGTTGTCCAAAGAAGAAGAGCTTAGTAGATATTGTAAAAGTGTATATGCTTACCCATCACATAAAATTTCAAAAGCATTCTTGCCCCACTGGGCATATCGTATGTTTGACTCCTATTGGCTAGCACAAAGGGCTGCAGATATGTGGAAGCAAATAGTTGGGGTGCCTGGCATGGATCATCTGATTAAGAAGCCTGATGTTTTATCATTTTACATAGCCAGTAAAATACCAGTGTCTGAATCTACTAGGCAGGAGCTTTTGGAAATCAATGGCATTGCATATAGGTTGCGCAGGGAAATTGAATTACTGGAGAGCATTGATCTTATCCGGTGTAAAAACTGCCAGACTATAATTGCAAAACGAAGTGATATGTTGGTGATGTCAAGTGAGGGTCCTCTTGGTGCGTATGTGAATCCAGGCGGTTATGTGCATGAGATAATGACTCTTTATAATGCCAATGGCTTAGCTCTCCTTGGGCCAGCAGTTACAGAATACAGTTGGTTTCCTGGGTATGCGTGGACAATTGCGACATGTGCCACATGTAAAACCCAAATGGGGTGGCTTTTTACAGCCACGAGCAGAAAACTGAAACCCATCTCATTTTGGGGGATTCGGAGCTGTCAAGTTGCAGAAGAAATACGTCGAAACCTTTAA 1611 0.4382 MNEEERERYQIQQIRLLDLEELEDEEVDHLLHHPRSPSHSSDDEPHSTDGAAESSGEFTFNTSIASLHTYLGDVEDTRHRSAFLDGGAVVNLPLFCLPGVVLFPGATLPLRVVESCFVAAVERALSQVDVPYTIGVIRIHRDTANRRMKSASIGTTAEIRQYGRLEDGSLNVVTRGQQRFHLRRCWNDVEGVPYGEIQIIDEDIPLRTPRDVFGKLAPLSNVCCSRDVSHTLSSKYSHVKIRGSNNGENDSEANSDDSFESELSLREKTIPLSVSGSSYDGDMMDESTNGNDVKFKHKSDQEIRSNLDLRTGNCSTSGKQLSKEEELSRYCKSVYAYPSHKISKAFLPHWAYRMFDSYWLAQRAADMWKQIVGVPGMDHLIKKPDVLSFYIASKIPVSESTRQELLEINGIAYRLRREIELLESIDLIRCKNCQTIIAKRSDMLVMSSEGPLGAYVNPGGYVHEIMTLYNANGLALLGPAVTEYSWFPGYAWTIATCATCKTQMGWLFTATSRKLKPISFWGIRSCQVAEEIRRNL* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01605 536 PANTHER CEREBLON 47 526 - -
Rops10g01605 536 MobiDBLite consensus disorder prediction 26 55 - -
Rops10g01605 536 MobiDBLite consensus disorder prediction 26 50 - -
Rops10g01605 536 ProSiteProfiles CULT domain profile. 425 532 IPR034750 -
Rops10g01605 536 MobiDBLite consensus disorder prediction 240 260 - -
Rops10g01605 536 SMART lon_5 91 424 IPR003111 -
Rops10g01605 536 ProSiteProfiles Lon N-terminal domain profile. 92 424 IPR003111 -
Rops10g01605 536 Pfam ATP-dependent protease La (LON) substrate-binding domain 91 423 IPR003111 -
Rops10g01605 536 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 428 519 IPR004910 -
Rops10g01605 536 CDD CRBN_C_like 428 524 IPR034750 -
Rops10g01605 536 FunFam Blast:Protein cereblon homolog 421 536 - -
Rops10g01605 536 Gene3D Peptide methionine sulfoxide reductase. 421 535 - -
Rops10g01605 536 SUPERFAMILY PUA domain-like 91 423 IPR015947 -
Rops10g01605 536 Gene3D - 72 200 IPR046336 -
Rops10g01605 536 FunFam Lon protease homolog 356 420 - -
Rops10g01605 536 FunFam ATP-dependent protease La domain-containing protein 72 200 - -
Rops10g01605 536 Gene3D - 356 420 - -
Rops10g01605 536 Coils Coil 2 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01605 Rops-Chr10 29593018 29599215 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01605 K11793 - gmx:100779918 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01605 10 29593018 29599215 Rops10g01605 10 29593018 29599215 ECH