Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01589 ATGGATGGTCAACTTGGTATCAGTGGAGAGGACTCACATGAAATAAGTTATGCTGACAGAGATTATTCTCGAGAGCCCTGCTTACTCAACAAGTTTCTCGAGTTGGTCCCCCATGATTCTTCAACAGATGTGTCTGAAGCCGAAGGCAAAGCATCACCAAATATATGTGCTGTCAAAGCAGGAGGAATGATGTCTCTGGCTATTGATGATCGTGGGACCCTGTGGATGTGGGGCAACTGCCCACAACAAAGCAAAGAAGGCGGGTTATCTCTTGTAAGCAATTTCACTCCAACACCAGTCCCGGATTTTCATGGTCGCACTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCCCTGGTTAGTGCTGGAGAATCATACAAGGGTGAAGATGTAGTGTGCTACTCTTGGGGTTATAACAGCCGTGGCCAATTAGGCTTGGGGGATAGGGAGAGCAGGCTGCATCCAGAAGTTATAAAAACATTTGATGAGGAGTCTCCTTGGACAATTTATGAGGTAGCATGTGGTGCCTTTCACACTGCTTTGCTCGCTCACAAAAAGAAACCTGGTGACACATTAGAAAGCACATGCTGGACATTTGGCCTTGGGGATAATGGCCAACTTGGGCATGGAACAACACAAAGCACTTTATTTCCTACACCTGTTAAAGAATTGCCACAAAATATATATCTTATTAGTGTTGACTGTGGCTTGTTTCATACAAGTGTTGTTTCCTCGGCCGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGCTAGTCGTGCTGAAGCAGATTCTGGGGATGCCCTCTCTCCCATTCTTATCTCATGCAAGCCACATCAACCTAAATTTCCAGATCCAGTAAAAGTCACATGTGGGGCTGCACATACTACTGTTGTTGCGCAGGAGGGATATAAGGTGTGGTCTTGGGGTAGGGGGAAGAGTGGAGTTCTTGGAACTGGTAAGGAGGTGGATTGTTACACTCCCACCATCGTGCTGTGGCCTCCAACGATGGAGGATTTCAAGGAAGAGGAATCAAAGAGCTCTGGTGAGCAAGATAAGGCAACAGAAAAGGAAACCGAAGCAGATGAGAAATTATCATCAGCAATGAAAGAGCTGAAGCTGCTTCAAACTAAGCTATCCATAATAGAAAAATATGCTAGTATACTTCATGGTTCTATTTTTGGAAAACCTTTTGATGAGCAAGATATCCCTGTTTCATTGCAGAATTCAGGTTCATTCGACATTGCAAAAGAGTGGGAGAACATGTTAGAGGCAGCGGATCATAGGAAGCTGATTAGGTTGGAAATGTTTTACCGTGACATGCTTGCTGGTGTGAAAGATAAACTAATGAAGAGAAGGATCAAGGAAATTATAAAGGAGTGTCTCCAATCTTCAGAGGTGAAAAATTAG 1434 0.4463 MDGQLGISGEDSHEISYADRDYSREPCLLNKFLELVPHDSSTDVSEAEGKASPNICAVKAGGMMSLAIDDRGTLWMWGNCPQQSKEGGLSLVSNFTPTPVPDFHGRTVVKVACGNEHVVALVSAGESYKGEDVVCYSWGYNSRGQLGLGDRESRLHPEVIKTFDEESPWTIYEVACGAFHTALLAHKKKPGDTLESTCWTFGLGDNGQLGHGTTQSTLFPTPVKELPQNIYLISVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPDASRAEADSGDALSPILISCKPHQPKFPDPVKVTCGAAHTTVVAQEGYKVWSWGRGKSGVLGTGKEVDCYTPTIVLWPPTMEDFKEEESKSSGEQDKATEKETEADEKLSSAMKELKLLQTKLSIIEKYASILHGSIFGKPFDEQDIPVSLQNSGSFDIAKEWENMLEAADHRKLIRLEMFYRDMLAGVKDKLMKRRIKEIIKECLQSSEVKN* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01589 477 MobiDBLite consensus disorder prediction 347 372 - -
Rops10g01589 477 Pfam Regulator of chromosome condensation (RCC1) repeat 136 184 IPR000408 -
Rops10g01589 477 Pfam Regulator of chromosome condensation (RCC1) repeat 198 244 IPR000408 -
Rops10g01589 477 Pfam Regulator of chromosome condensation (RCC1) repeat 75 121 IPR000408 -
Rops10g01589 477 Pfam Regulator of chromosome condensation (RCC1) repeat 314 342 IPR000408 -
Rops10g01589 477 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 46 364 - -
Rops10g01589 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 310 IPR000408 -
Rops10g01589 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 133 187 IPR000408 -
Rops10g01589 477 SUPERFAMILY RCC1/BLIP-II 54 342 IPR009091 -
Rops10g01589 477 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 174 184 IPR000408 -
Rops10g01589 477 Gene3D - 1 374 IPR009091 -
Rops10g01589 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 196 248 IPR000408 -
Rops10g01589 477 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 72 124 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01589 Rops-Chr10 29386167 29388047 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01589 - - gmx:100815199 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01589 10 29386167 29388047 Rops10g01589 10 29386167 29388047 ECH