Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01586 ATGCTTCCTCACTCACAAAACTCCTTCAACCATTTTCCTCTTCTACCTCTTTTTCTACACCAAAAGGACTCCATTTCCATGGCTTTTACAACCTTTCCAGCTATCAGAAACTCCATTTCATGGCCAACTATGGTTGTTTCTGATAACTTCAGGGAGGGGTTTCCATCTAGAAACAAGGGGGGCATCTATAAAGTCCAACGCAATCTTCAAGACTTGACAGTGGCAAATGTTGCCAGTCCATTGCCTGTGATTGCTCCACCACCGGAGGAACAGTTAGTGACCAACGGCGGCCGCCACAACCACCACCATGTTGCATGGACAAGTATCCTTCAAGAGAGATGGGAAGGAGAGTTGCTTGTTGAAGGACAAATACCACTCTGGCTGAAAGGAACGTACCTAAGGAATGGCCCTGGCATGTGGCACATAGGAGACTACAACTTCAGGCACCTCTTTGACGGCTACGCCACCTTGGTGAAGCTTCACTTCGAGAACGGCCGGTTAATCGCCGGCCACCGGCAAATAGAATCTCAAGCTTACCAAGCAGCAAAGAAGAACAAGAAGATTTGTTACCGTGAATTTTCTGAAGTGCCTAAGGCTGAAAACTTCTTGGCCTACGTGGGGGAGCTTGCAAACTTATTCTCCGGTGCTTCACTCACAGACAATGCCAACACCGGCGTGGTGAAGCTCGGTGACGGAAGGGTGGTTTGCCTGACGGAGACACAAAAAGGATCCATAGTGATAAACCCTGACACATTGGACACACTTGGAAGGTTTGAGTACAGTGACTCTTTGGGGGGTCTCATTCACTCTGCACACCCCATTGTGACAGATAAAGAGTTTTTAACGTTACTACCTGATCTAATAAAGCCAGGTTACTTGGTGGTGAGGATGGAACCTGGCACCAATGAGAGAAAGGTGATCGGGCGGGTCGATTGTCGGGGCGGGCCATCACCCGGTTGGGTTCATTCCTTTCCTGTTACTGAACACTATGTTATTGTGCCTGAAATGCCATTGAGATACAGTGCTCAGAATCTGCTCAAGGCTGAGCCAACTCCATTATACAAGTTTCAGTGGCACCCTCAGTCTAAAGCTTTTATGCATGTTATGTGCAGGACTAGTGGAAAGATTGTGGCAAGTGTGGAGGTGCCTCTGTTTATTACTTTCCATTTCATAAATGCTTATGAAGAGGAAGATGAAGATGGGAGGGTGACGGCAATTATTGCTGACTGTTGTGAGCACAATTCAGATACTACCATTCTTGAAAGGCTTAGATTACAGAACCTTCGTTCATTTAATGGTGAAGATGTTCTACCGGATGCTAGGGTTGGTCGGTTCAAAATACCACTGGATGGAAGTCCATATGGAACATTAGAGGCAGCATTAAACCCAAATGAACATGGGAAAGGCATGGACATGTGCAGCATAAACCCTAATTATTTAGGAAAGAAATACAGATATGCCTATGCTTGTGGAGCACACCGCCCTTGTAACTTTCCCAACACCATTACCAAGCTCGATTTAGAATTGAAGAAGGCTAAGAACTGGTATGCTGAAGGTGCTATACCCTCAGAACCATTATTTGTGGCTCGACCAGGAGCAACAAAGGAAGACGATGGCGTGGTAATCTCCATAATCAGTGAGAAAAATGGAGGAGGTTATGCGTTGTTGTTAGATGGTTCCACTTTTGAAGAGATTGCTAGGGCTAAGTTCCCTTATGGACTTCCATATGGATTGCATGGATGCTGGGTTCCAAAAGAGTAA 1761 0.46 MLPHSQNSFNHFPLLPLFLHQKDSISMAFTTFPAIRNSISWPTMVVSDNFREGFPSRNKGGIYKVQRNLQDLTVANVASPLPVIAPPPEEQLVTNGGRHNHHHVAWTSILQERWEGELLVEGQIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHFENGRLIAGHRQIESQAYQAAKKNKKICYREFSEVPKAENFLAYVGELANLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVINPDTLDTLGRFEYSDSLGGLIHSAHPIVTDKEFLTLLPDLIKPGYLVVRMEPGTNERKVIGRVDCRGGPSPGWVHSFPVTEHYVIVPEMPLRYSAQNLLKAEPTPLYKFQWHPQSKAFMHVMCRTSGKIVASVEVPLFITFHFINAYEEEDEDGRVTAIIADCCEHNSDTTILERLRLQNLRSFNGEDVLPDARVGRFKIPLDGSPYGTLEAALNPNEHGKGMDMCSINPNYLGKKYRYAYACGAHRPCNFPNTITKLDLELKKAKNWYAEGAIPSEPLFVARPGATKEDDGVVISIISEKNGGGYALLLDGSTFEEIARAKFPYGLPYGLHGCWVPKE* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01586 586 Pfam Retinal pigment epithelial membrane protein 112 584 IPR004294 GO:0016702
Rops10g01586 586 PANTHER BETA-CAROTENE DIOXYGENASE 110 584 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01586 Rops-Chr10 29359066 29362108 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01586 K17913 - gmx:100814148 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01586 10 29359066 29362108 Rops10g01586 10 29359066 29362108 ECH