Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01578 ATGGCCCTTTCATATAATGCTTTTCTAGTGAATTGCTCCATTCAGAAAAGACCCACTTGTGTCCCAGACAATTCTCGACACTACAACATCCCACTACCCTTCTCTGTTTTTAAGCCAATCATGAAAGCAGTATCTGAAGTTCCCTTGCAAACTGATGTTCCCAAAACCATGAAAAATACTGCGGCTAAATTCCTTGACGCTTTTGTGGATTCTTTCTTTCAATTCATTGACCAGCCTTTGCTTCCATCTCAGGGTAACTTTGCTCCTGTGGAGGAGTTGGGGGAAGCCATATTTATGACCAGCATCCAAGGACTAATTCCGGATGATTTTCCAGAGGGTGTCTACATTAGAAATGGATCAAATCCACTTTTTGGAGGACTAAAATCAACAAATTCTATTTTTGGGAGGTCAAGCCACATTTGGGTGGAAGGAGAGGGAATGCTTCATGCGTTGTATTTTAAAAAATCAAGTCATGGGAGCTGGACCGTCCTCTACAACAACAAGCACGTCGAAACCGATACATACAAGCTTGAAAAACAAAGAAACAAACCATTGTTTCTACCGGCCATAGAAGGCGATTTACCGGCCATTTTGTCTGCTTATCTTCTAAACTGGTTGCGCTTTGGCAAAGTAAACAAATATATTAGCAACACCAATGTCTTTGAGCATTCAGGGAAGTTTTACTCGGTTGCTGAAAGTCACATCCCGCAAGAGATTGATATCTTTACCCTGAAAACTAAGAACAATTGGGATGTCAGCGGAGCCTGGAATCGACCATTTATCAGCCATCCTAAGAAAGCTCCAGGTACAAGGGAACTAGTTACATTAGGGGTGGCACCAACTAAACCTTTTGCTGTAGTTGGAATTATTTCTGCTGATGGTAAGAAAATGGTTCATAAAGTTGATCTCAAACTAAACAGGTGCAGTCTTTGCCATGACATAGGTGTTACACAGAGGTACAATGTGATTATGGATTTTCCACTAACCATTGATATAAACAGACTTCTTAGAGGAGGCCCATTAATAAAGTATGATAAGGAGGAATATGCTAGGATTGGGGTAATGCCACGCTATGGTAACGCCAACTCTATCAAATGGTTTGAGGTGGAACCTAATTGCACCTTTCACATCATCAATTCTTTCGAGGATGGTCACGAGGTTGTAGTGAGGGGCTGCAGATCTCTTGATTCACTGATTCCTGGACCTGACCCAAGTTTGAATGAATTTGAGTGGCTATCTCGTTGTTATGAATGGCGATTGAATATGCAAACTGGGGAGGTTAAGGAGAAAGATCTTTGTGGAGCCAAAGTAGCTTATATGGATTTTCCTATGATCAATGAAAGCTTCATAGGTATTAAGAATAGATATGCATATACACAAGTAGTTGATCCCATTGCAAGCTCTGCTCAAGACGTGCCAAAATATGGAGGTTTAGCAAAGCTCTATTTTGATGAATCATGTGCACATTTCTCTAAGAGAGACAAAGATCAACCTATAAAAGTGGAATTCCATATGTTTGAGAAGAATACATTTTGCAGTGGGGCAGCCTTTGTGGCCAGAGATGGGGGTCTTGAAGAAGATGATGGTTGGATCATCACTTTTGCTCACAATGAAGATACTAATATATCTGAAGTTCATATAATTGACACAAAGAAGTTTTCTGGGGAGACGGTTGCCAAAATTACATTGCCTCAAAGAGTTCCATATGGGTTCCATGGAGCTTTCATGCCAATCTCATTTCAGGCTCTGTAG 1752 0.4081 MALSYNAFLVNCSIQKRPTCVPDNSRHYNIPLPFSVFKPIMKAVSEVPLQTDVPKTMKNTAAKFLDAFVDSFFQFIDQPLLPSQGNFAPVEELGEAIFMTSIQGLIPDDFPEGVYIRNGSNPLFGGLKSTNSIFGRSSHIWVEGEGMLHALYFKKSSHGSWTVLYNNKHVETDTYKLEKQRNKPLFLPAIEGDLPAILSAYLLNWLRFGKVNKYISNTNVFEHSGKFYSVAESHIPQEIDIFTLKTKNNWDVSGAWNRPFISHPKKAPGTRELVTLGVAPTKPFAVVGIISADGKKMVHKVDLKLNRCSLCHDIGVTQRYNVIMDFPLTIDINRLLRGGPLIKYDKEEYARIGVMPRYGNANSIKWFEVEPNCTFHIINSFEDGHEVVVRGCRSLDSLIPGPDPSLNEFEWLSRCYEWRLNMQTGEVKEKDLCGAKVAYMDFPMINESFIGIKNRYAYTQVVDPIASSAQDVPKYGGLAKLYFDESCAHFSKRDKDQPIKVEFHMFEKNTFCSGAAFVARDGGLEEDDGWIITFAHNEDTNISEVHIIDTKKFSGETVAKITLPQRVPYGFHGAFMPISFQAL* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01578 583 PANTHER BETA-CAROTENE DIOXYGENASE 97 576 IPR004294 GO:0016702
Rops10g01578 583 Pfam Retinal pigment epithelial membrane protein 88 577 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01578 Rops-Chr10 29229520 29234097 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01578 - - gmx:100817738 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01578 10 29229520 29234097 Rops10g01578 10 29229520 29234097 ECH