Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01576 ATGGATTTCTATGGCAGCATGATGGACACAGAACAGCTACCCCCAATTCACCTTCGCGTCCAAGATGTTCAGTTTAGTCCACCAAGACCTTCCACCTCTGATGCCTCAATGTTTCCAACCCCTTGTCCTGAATCACCATGGACACTTTCCCCTCTCCCTACTCCTTCCCCTTCACTACTTTACCACTGCATAGCCTCACTCCATCGCCATGAAGGTAACATCTATGCCATTGCAGCTTCCAAAGGTTTAGTCTTTACAGGCTCCAACAGTAGCAGAATTCGTGTTTGGAAACAACCAGATTGCATGGATAAAGGGTATCTCAAAGCAAGCTCTGGTGAGGTTCGAGCTATTTTAGCTTATAGTAACATGCTTTTCTCCTCACACAAGGACCACAAGATCCGCATATGGAACTTCACCCTTTCAGAGAAATTCAAATCCAAGAAACTAGGTACTCTTCCTAGAAAAACCTCGATCCTATCGTTCCCCGGAACAAAGAACACACATAAACACAAAGACTCGGTTTCTTGCATGGCTTACTACCACTCAGAAGGGCTCTTGTACACTGGCTCACATGATAGAACAGTGAAAGCTTGGCGTGTCTCTGATAGAAAATGTGTTGACTCATTTGTGGCACATGAAGATAATATAAATGCTACTTTGGTGAACCAAGATGATGGTTCACTTTTCACTTGTTCCTCTGATGGATCAGTGAAAATATGGAGAAGGGTTTACACAGAAGACTCACACACCCTCACAATGACCCTCAAATTCCAACCTTCACCTGTGAATGCATTAACATTGAGTTCCTCGTTTAACCATTGCTTCCTCTATTCAGGGTCTTCAGATGGAATGATAAATTTCTGGGAGAAGGAAAGATTGTGCTATAGATTCAACCATGGAGGGTTCTTGCAGGGTCACCGTTTTGCAGTTCTTTGTTTAGCAACAGTTGGGAACATGATATTCAGCGGTTCTGAGGACACAACAATAAGGGTATGGAGAAGAGAAGAAGGTAGTTGCTACCATGATTGTTTAACAGTTTTAGATGGACATAGAGGACCAGTTAGATGCTTGGCTGCATGCCTTGAAATGGAGAAAATAGTGATGGGGTTCTTGGTTTATAGTGCTAGTTTGGACCAAACATTTAAGGTGTGGAGGATTAAGGTTTTGCCCGATGAAAACATGTGTTTGGATTACACTGATCAGTGTGAAGCAAGAGTGAAGGTTAGAGAGTACGATATGAGCCCGGTTTTGTCGCCTTCATGGGTAGAGAAGAAACTTCAAGGTAGCGGCCACTTTCAATGA 1302 0.4332 MDFYGSMMDTEQLPPIHLRVQDVQFSPPRPSTSDASMFPTPCPESPWTLSPLPTPSPSLLYHCIASLHRHEGNIYAIAASKGLVFTGSNSSRIRVWKQPDCMDKGYLKASSGEVRAILAYSNMLFSSHKDHKIRIWNFTLSEKFKSKKLGTLPRKTSILSFPGTKNTHKHKDSVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFVAHEDNINATLVNQDDGSLFTCSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALTLSSSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHDCLTVLDGHRGPVRCLAACLEMEKIVMGFLVYSASLDQTFKVWRIKVLPDENMCLDYTDQCEARVKVREYDMSPVLSPSWVEKKLQGSGHFQ* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01576 433 Pfam WD domain, G-beta repeat 169 198 IPR001680 GO:0005515
Rops10g01576 433 Pfam WD domain, G-beta repeat 115 137 IPR001680 GO:0005515
Rops10g01576 433 Pfam WD domain, G-beta repeat 204 240 IPR001680 GO:0005515
Rops10g01576 433 Pfam WD domain, G-beta repeat 342 384 IPR001680 GO:0005515
Rops10g01576 433 Pfam WD domain, G-beta repeat 302 332 IPR001680 GO:0005515
Rops10g01576 433 Pfam WD domain, G-beta repeat 253 288 IPR001680 GO:0005515
Rops10g01576 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 240 - -
Rops10g01576 433 SMART WD40_4 340 385 IPR001680 GO:0005515
Rops10g01576 433 SMART WD40_4 100 137 IPR001680 GO:0005515
Rops10g01576 433 SMART WD40_4 248 289 IPR001680 GO:0005515
Rops10g01576 433 SMART WD40_4 60 97 IPR001680 GO:0005515
Rops10g01576 433 SMART WD40_4 296 333 IPR001680 GO:0005515
Rops10g01576 433 SMART WD40_4 202 241 IPR001680 GO:0005515
Rops10g01576 433 SMART WD40_4 161 199 IPR001680 GO:0005515
Rops10g01576 433 SUPERFAMILY WD40 repeat-like 62 387 IPR036322 GO:0005515
Rops10g01576 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 332 - -
Rops10g01576 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 167 208 IPR001680 GO:0005515
Rops10g01576 433 PRINTS G protein beta WD-40 repeat signature 320 334 IPR020472 -
Rops10g01576 433 PRINTS G protein beta WD-40 repeat signature 124 138 IPR020472 -
Rops10g01576 433 PRINTS G protein beta WD-40 repeat signature 186 200 IPR020472 -
Rops10g01576 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 167 201 - -
Rops10g01576 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 240 IPR001680 GO:0005515
Rops10g01576 433 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 34 388 IPR045182 -
Rops10g01576 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 342 IPR001680 GO:0005515
Rops10g01576 433 CDD WD40 63 385 - -
Rops10g01576 433 Gene3D - 54 155 IPR015943 GO:0005515
Rops10g01576 433 Gene3D - 156 414 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01576 Rops-Chr10 29203500 29204801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01576 170 389 Miscellaneous Gene Families AT5G08390 23.348 5.22e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01576 - - gsj:114414206 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01576 10 29203500 29204801 Rops10g01576 10 29203500 29204801 ECH