Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01565 ATGGCATCCATTAGAAGAACCTTGTCTCCAGTGCCTCGAGCAGGAACTGTAGCAAATTTAGAAGTCTGTTCAGTAGCTTCTCCCTTGTCTAAGTCCTCATCAAGTCCTCAGAACTGTCCACCATCCACTGGATTGTTGTCTTCTTCAGTCAACTCACTGGACTCCCGTGCTTTTGTGCTTGGCGTTTTCTCCCCAAGAACTCTGAGGGCTCTTGATAGATCAAAGCCAAAGGGTCAGCTATGGAGGAAGGTGCTTTTCCATTTTTTCATTTGTTTCATGGTTGGTGTTTCTATTGGATTCATTCCACTCGCATCAAGGAACTTTTCCATGAATCTCATGCCAAAGCATCAAGCCTTCTCTTTTGAGGTGATATCTGCAGTTGGAAATTTCCAGCCGCTTGAAAATGTGACCATAAATGTGACACCATCAACCGATGAGGCCGTGAAGTTTAATGCTACTTTGAATTCAGTAATGAAAGCACAGGAACTAACAGATGGGGTGGCATATAATATCTCCAGTAGTCAATTCAGTGTAGATCCATATTTGGAGTCTCAGAAGCTTCTCATAATTGTGACCCCGACATACAATCATATGTTTCAAGCATATTACTTGCATCGCTTGTCACAGACTTTAAAATTGGTCCCACCTCCTTTGTTGTGGATTGTTGTTGAGATGACCTCCCAATCTGAAGAAGCTGCTGACATCTTGAGGAATAGTGGGATCATGTACAGGCATCTTGTTTGCAAAATGAATCTAACCAACACAAGCCATAGGAGCATTCATCAAAGAAATGTTGCAATAGCTCACATTGAAACTCATCGCCTTGATGGAATTGTCTACTTTGCCGATGATGATAACATCTACTCAGTGGAGCTCTTTCAGCAAATGAGAGAAATAAGGCGATTTGGAACATGGACTGTAGCAAGACTATCCGGTGATAAAAGAAACATTGTTTTGCAAGGGCCCATTTGTAATGGAAGTCAAGTAATTGGATGGCACATAAATGAATCAAATGGGAAATCTAGAAGATTTCATGCTGAAATGCCTGGTTTTGCCTTCAATAGTACCATACTCTGGGATCCAAAGAAGTGGCATCGGCCCACTCTCGAACCTATCAGGCAGCTTGACTCAGTCAGGGAAAGTTTGTGGGTTAGTACATTGATTGAGCAAGTTGTTGAAGATGAAAGTCAAATGGAAGGCTTAATGAACAATTGCTCGAGAGTTATGGTTTGGCATATTGATCTCAAATCATCTTATTCCTTCTATCCTCAGAAATGGAGTATAAAGAACAACCTAGATGTCATTTTTCCTGTTCCACTTCCGCAAAATTCTTGA 1335 0.4142 MASIRRTLSPVPRAGTVANLEVCSVASPLSKSSSSPQNCPPSTGLLSSSVNSLDSRAFVLGVFSPRTLRALDRSKPKGQLWRKVLFHFFICFMVGVSIGFIPLASRNFSMNLMPKHQAFSFEVISAVGNFQPLENVTINVTPSTDEAVKFNATLNSVMKAQELTDGVAYNISSSQFSVDPYLESQKLLIIVTPTYNHMFQAYYLHRLSQTLKLVPPPLLWIVVEMTSQSEEAADILRNSGIMYRHLVCKMNLTNTSHRSIHQRNVAIAHIETHRLDGIVYFADDDNIYSVELFQQMREIRRFGTWTVARLSGDKRNIVLQGPICNGSQVIGWHINESNGKSRRFHAEMPGFAFNSTILWDPKKWHRPTLEPIRQLDSVRESLWVSTLIEQVVEDESQMEGLMNNCSRVMVWHIDLKSSYSFYPQKWSIKNNLDVIFPVPLPQNS* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01565 444 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 79 433 IPR005027 GO:0015018|GO:0016020
Rops10g01565 444 CDD GlcAT-I 186 412 IPR005027 GO:0015018|GO:0016020
Rops10g01565 444 SUPERFAMILY Nucleotide-diphospho-sugar transferases 187 431 IPR029044 -
Rops10g01565 444 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 187 433 IPR029044 -
Rops10g01565 444 FunFam Glycosyltransferases 187 429 - -
Rops10g01565 444 Pfam Glycosyltransferase family 43 207 415 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01565 Rops-Chr10 29045649 29050430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01565 1 435 Glycosyltransferase AT1G27600 43.807 3.53e-119 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01565 K20869 - gmx:100808765 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01565 10 29045649 29050430 Rops10g01565 10 29045649 29050430 ECH