Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01556 ATGGTGAACCCGTTGGTGGAACGTGCTACGAGCGACATGCTTATAGGCCCTGATTGGGCTTTGAACATCGAGATCTGTGACATACTCAATCGTGACCCTGGGCAAGCAAAGGATGTTGTTAAAGGTATAAAGAAGCGGATTGGGAATAAAAATTCGAAAGTTCAACTCCTTGCACTGACTCTGCTGGAGACAATCATAAAGAATTGTGGGGATATTGTCCACATGCATGTTGCAGAGAGAAATGTTCTGCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTCTCATGTCAGAGAGAAGATACTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTGCGTGCTGGGGCAGTGTTCCCTCAAAGGTCTGAGCAATCTGCACCTGTATTCACACCACTACAAACACAACCATTGACATCATACCCTCAAAATATACGAGACTCTGATGCTCGGCAACACACTGCTGAGTCCTCAGTGGAGTCTGAGTTTCCAACCCTAAGTTTGACTGAAATTCAGAATGCACGTGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCGTTAGACCCTGGTAACAAAGAAGGTCTCCGGCAGGAAGTTATTGTTGATTTGGTAGAGCAGTGTCGAGCATACAAGCAGCGAGTGGTACACCTTGTTAATTCAACTTCGGATGAGTCACTGCTATGCCAAGGACTAGCTCTGAATGATGATCTTGAGCGTGCACTGGCCAAGCATGAATCCATTGCCTCAGGAACTCCTGCTCAAAATCTCACTGAGAAACTGAAGCCTGAAGCTACTGGAGCACTTGTAAATGTTGACGGTCCTTTGGTTGATACTGGAGATACTAGTAAACAAACTGATGGGAGATCGTCTTCTAGTGCTGAAGCAGGATCTCAGACATTGAATCAGTTATTGCTTCCTGCACCCCCTGCATCAAATGGTTCAGCTCCCTCTGCAAAGATTGATCCCAAACTGGACCTGCTCAGCGGTGATGACTATAACTCTCCAAAAGCTGAGACTTCACTTGCCCTCGTTCCTCTGGGAGAACCACAGGCAGCCACTCCTATGTCTCAGCAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAATGTCCCTACTTCTGTTAATACCCAGCCAACTAACGTTGCTGGCCAAACCAGTCCATTAGCCCCCCAATTTCAACAGCAGCAAACTTTCATATCTCAAGGTGTATCTCACCCCAACGGAAGTATGCCAAATGTGGGTTCACCTACGGATGAGCAATCACCATATATACAAAGCACAGGTCCTGCTTGGAATGGTCAGGTTGCGCAGCAGCAACAGCCACCTTCACCAGCTTATGGTACACAAAGTGGCGGATCATTGCCCCCACCTCCCTGGGAAGCTCAACCAACAGACAATGGTAGTCCAGTAGCAGGCAGTCAATACGCACAACCACTGCAAGTCACTCAAATGGTTATGACACACGCACAAAGTGCTGCACATCCTCAGGGACCTCAAGTAATGGGATATGACCAAGCTGTTGGAATGTATATGCAGCCAAATGCTAGCCATATGTCAACTATTAATAACCATGTTCAAGGCAATCAACTGGGCTTGTACCCTCAGCATATTCAGGGTGTTGCAGGTCCCTATATGGGTATGGTTTCACATCAAAGGCAAAATGGTCCTTTCGCTTCCATGTATCCTCAACAGATGTATGGCAACCAATTCATAGGATATGGCTATGGCCAGCAACAAGGAGTTCAATATGTTGAGCAGCAAATGTATGGTTTATCTGTGAGAGATGATAGGGCTCTGAGAAATTCTTACCAGGTTTCTGCTACATCTTATGCGCCATCTAGGAAGCCTTCCAAGCCAGAGGATAAGTTATTTGGGGACCTTGTTGACATGGCAAAAGTTAAACCAAAATCTACTCCAGGCCGAGCTGGGTAG 1998 0.458 MVNPLVERATSDMLIGPDWALNIEICDILNRDPGQAKDVVKGIKKRIGNKNSKVQLLALTLLETIIKNCGDIVHMHVAERNVLHEMVKIVKKKPDSHVREKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSEQSAPVFTPLQTQPLTSYPQNIRDSDARQHTAESSVESEFPTLSLTEIQNARGIMDVLAEMLNALDPGNKEGLRQEVIVDLVEQCRAYKQRVVHLVNSTSDESLLCQGLALNDDLERALAKHESIASGTPAQNLTEKLKPEATGALVNVDGPLVDTGDTSKQTDGRSSSSAEAGSQTLNQLLLPAPPASNGSAPSAKIDPKLDLLSGDDYNSPKAETSLALVPLGEPQAATPMSQQNALVLFDMFSNGSNVPTSVNTQPTNVAGQTSPLAPQFQQQQTFISQGVSHPNGSMPNVGSPTDEQSPYIQSTGPAWNGQVAQQQQPPSPAYGTQSGGSLPPPPWEAQPTDNGSPVAGSQYAQPLQVTQMVMTHAQSAAHPQGPQVMGYDQAVGMYMQPNASHMSTINNHVQGNQLGLYPQHIQGVAGPYMGMVSHQRQNGPFASMYPQQMYGNQFIGYGYGQQQGVQYVEQQMYGLSVRDDRALRNSYQVSATSYAPSRKPSKPEDKLFGDLVDMAKVKPKSTPGRAG* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01556 665 FunFam TOM1-like protein 2 1 148 - -
Rops10g01556 665 CDD GAT_GGA-like_plant 188 266 - -
Rops10g01556 665 Gene3D - 183 274 IPR038425 -
Rops10g01556 665 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Rops10g01556 665 MobiDBLite consensus disorder prediction 627 665 - -
Rops10g01556 665 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Rops10g01556 665 MobiDBLite consensus disorder prediction 423 495 - -
Rops10g01556 665 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Rops10g01556 665 Gene3D - 1 148 IPR008942 -
Rops10g01556 665 SUPERFAMILY GAT-like domain 141 269 - -
Rops10g01556 665 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Rops10g01556 665 MobiDBLite consensus disorder prediction 285 351 - -
Rops10g01556 665 Pfam VHS domain 4 129 IPR002014 GO:0035091|GO:0043130
Rops10g01556 665 CDD VHS 2 132 - -
Rops10g01556 665 MobiDBLite consensus disorder prediction 296 327 - -
Rops10g01556 665 MobiDBLite consensus disorder prediction 154 179 - -
Rops10g01556 665 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Rops10g01556 665 PANTHER TOM1-LIKE PROTEIN 1 659 IPR044836 GO:0035091|GO:0043130|GO:0043328
Rops10g01556 665 MobiDBLite consensus disorder prediction 423 472 - -
Rops10g01556 665 MobiDBLite consensus disorder prediction 637 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01556 Rops-Chr10 28952600 28961935 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01556 - - gmx:100805762 1045.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01556 10 28952600 28961935 Rops10g01556 10 28952600 28961935 ECH