Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01553 ATGCGCCCACCGGTTATTCTCGAAACTACCTCTTCTTCTTCTTTTGATTCTGCTTCTTCACCCAGCAATCGCAGACTCAACACTCTTGTGAGGCACCTTGTTGATCACGATCAGAATCAAATGGATTCTCAGAATATCTCTGCTTCTGCAACCGCTTCTTCTGATTCCGTTTTCGCTCACCTCGTTCGTGCTCCCGAAGATCCTATCCTCGGGGTGACTGTCGCTTACAACAAAGACCCGAGCCCAGTTAAGCTCAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAACAACTAGTGAACGACCTGTCACGCAACAAGGAATATCTTCCAATTGTTGGGCTCGCTGATTTTAATAAACTGAGTGCTAAGCTTATTTTTGGTGCTGACAGTCCTGCTATTCAAGAAAACAGGATTACCACTGTACAATGCTTGTCTGGTACTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCGAAACACTATCACCAACGGATTATATACTTGCCACAACCAACTTGGGGCAATCACCCGAAGGTTTTCAACAATGCTGGGTTATCTGTCAAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGACTTTCAAGGACTTCTAGAAGATCTTGGTTCTGCCCCTGATGGATCTGTTGTTTTGCTACATGCATGTGCACATAACCCTACTGGTGTTGATCCAACTCTTGAGCAATGGGAGCAGATTAGGCAGCTGATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCACAGCCTGTTCGTATGTTTGTTGCCGATGGGGGTGAATTGCTGTTAGCCCAGAGTTATGCAAAGAACCTGGGTCTTTATGGAGAACGTGTTGGTGCCTTGAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAACTTGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCGTCCATTGTGGCTGCCATTCTCAAGGACCGGGATTTGTACAATGAGTGGACTGTTGAGTTGAAGGCAATGGCTGATCGTATTATCAGTATGCGCCAACAACTTTTTGATGCTTTACGTGCCAGAGGCACTCCAGGTGATTGGAGTCACATTATCAAGCAGATTGGAATGTTCACTTTCACAGGATTGAATACTGAGCAAGTTTCTTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGGAGGATTAGCATGGCTGGTTTGAGCTCCAAAACAGTCCCACATCTGGCGGATGCAATCCATGCAGCTGTAACCCGTGTTGGCTAA 1377 0.4561 MRPPVILETTSSSSFDSASSPSNRRLNTLVRHLVDHDQNQMDSQNISASATASSDSVFAHLVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQQLVNDLSRNKEYLPIVGLADFNKLSAKLIFGADSPAIQENRITTVQCLSGTGSLRVGGEFLAKHYHQRIIYLPQPTWGNHPKVFNNAGLSVKTYRYYAPATRGLDFQGLLEDLGSAPDGSVVLLHACAHNPTGVDPTLEQWEQIRQLIRSKALLPFFDSAYQGFASGSLDADAQPVRMFVADGGELLLAQSYAKNLGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSSPPIHGASIVAAILKDRDLYNEWTVELKAMADRIISMRQQLFDALRARGTPGDWSHIIKQIGMFTFTGLNTEQVSFMTKEFHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTRVG* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01553 458 PRINTS Aspartate aminotransferase signature 263 275 IPR000796 GO:0006520|GO:0008483
Rops10g01553 458 PRINTS Aspartate aminotransferase signature 331 356 IPR000796 GO:0006520|GO:0008483
Rops10g01553 458 PRINTS Aspartate aminotransferase signature 399 417 IPR000796 GO:0006520|GO:0008483
Rops10g01553 458 PRINTS Aspartate aminotransferase signature 232 251 IPR000796 GO:0006520|GO:0008483
Rops10g01553 458 Gene3D - 117 358 IPR015421 GO:0003824
Rops10g01553 458 FunFam Aspartate aminotransferase 117 358 - -
Rops10g01553 458 Gene3D Aspartate Aminotransferase, domain 1 63 450 IPR015422 GO:0003824
Rops10g01553 458 PANTHER ASPARTATE AMINOTRANSFERASE 51 456 IPR000796 GO:0006520|GO:0008483
Rops10g01553 458 SUPERFAMILY PLP-dependent transferases 56 456 IPR015424 -
Rops10g01553 458 Pfam Aminotransferase class I and II 84 450 IPR004839 GO:0009058|GO:0030170
Rops10g01553 458 CDD AAT_like 85 438 - -
Rops10g01553 458 MobiDBLite consensus disorder prediction 1 23 - -
Rops10g01553 458 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 301 314 IPR004838 GO:0003824|GO:0009058|GO:0030170
Rops10g01553 458 FunFam Aspartate aminotransferase 347 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01553 Rops-Chr10 28929433 28934052 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01553 K14454 - gmx:547509 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01553 10 28929433 28934052 Rops10g01553 10 28929433 28934052 ECH