Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01543 ATGAGATCACAATCGAGATTTGCAGGCACTGCATTATCTTCATATTCTCCTTTCCTTCAGAAGAGTCTGTATTCCACTACTTCTGATACCAGAATAGTGCAGGACCTTCTGGCTCAGGTGGAGAAGGAGAGGCTGAGAGAAAAAAATGAGAGAATAAGGCTTGGTTTGGACACTGCTGACATCGATGCCGAGTGTGAAGAGGACTACATGGGTGTGGGCCCTCTCATTGAGAAGCTTGAAAAGGAGAAGCTCAAGGAATCCCCTGAACTGAACCGCTATGAAGAACCAACTGATTCTGACAGCGATGAAGAAGATGAAGAGGCTCACCAGAAGAAGTTCCATGATTTCGAGAGGAAGTTCAAGAAGCACCAAGACTTGCTCCAGAACTTCACCGATGCTGACACGCTCGACGATGCTTTCAAGTGGATGAGCAGGATTGACAAGTTTGAACACAAGCATTTTAGGCTCAGTCCTGAGTACCGGGTTATCGGGGAGCTCATGAATCGCCTCAAAGTAGTGACTGAGCAAAAAGATAAGTTTGTTCTACAGCACAAACTTAATAGGGCCTTGAGATTGGTGCAGTGGAAGGAAGCTTATGATCCCAATAACCCTGCCAATTATGGTGTCATTCAACATGAACAGGTGGGACCTTCTGTGGATGCCCTGCAACATTCTGGCTTTGAAAAGGAGAAGCAAATCATACAAGGAGATGATGCTGCTGCTGCTGATAATGATGATGAAGAAGAGTTTGATGACATGAAAGAAAAAGACAACATACTACTGGCCAAAATTGATGCTATAGACAAGAAACTTGAAGAGAAGCTAGCAGAACTTGAATATACATTTGGAAAGAAGGGTAAAGCTCTAGAGGAGGAGATTAGAGATCTTGCAGAGGAGAGAAATGAATTAACTGAGAAGAAAAGAAGGCCTCTTTACCGAAAGGGTTTTGATGTAAAATTGATAAATGTGAACCGAACTTGTAAAGTCACAAAGGGAGGACAAGTTGTTAAGTACACTGCTATGTTAGCATGTGGCAACTATAACGGTGTTATTGGTTTTGCAAAAGCCAAAGGCCCTGCAGTTCCAGTTGCCCTTCAAAAGGCATATGAGAAGTGCTTTCAGAATTTGCATTATGTAGAACGACATGAGGAGCATACAATTGCCCATGCAATACAAACATCTTATAAAAAGACCAAGGTGTATCTCTGGCCTGCTCCCACTACAACTGGTATGAAAGCTGGCAGAATAGTCCAAACAATATTGCATTTAGCTGGTTTTAAGAATGTCAAGTCGAAGGTTGTTGGTTCCAGAAATCCTCATAATACGGTTAAAGCTGTCTTCAAAGCCCTTAATGCGATTGAAACTCCAAGGGATGTCCAAGAGAAGTTTGGCCGGACTGTGGTTGAGAAGTATCTGTTATGA 1422 0.4276 MRSQSRFAGTALSSYSPFLQKSLYSTTSDTRIVQDLLAQVEKERLREKNERIRLGLDTADIDAECEEDYMGVGPLIEKLEKEKLKESPELNRYEEPTDSDSDEEDEEAHQKKFHDFERKFKKHQDLLQNFTDADTLDDAFKWMSRIDKFEHKHFRLSPEYRVIGELMNRLKVVTEQKDKFVLQHKLNRALRLVQWKEAYDPNNPANYGVIQHEQVGPSVDALQHSGFEKEKQIIQGDDAAAADNDDEEEFDDMKEKDNILLAKIDAIDKKLEEKLAELEYTFGKKGKALEEEIRDLAEERNELTEKKRRPLYRKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVIGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTTTGMKAGRIVQTILHLAGFKNVKSKVVGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01543 473 Gene3D - 267 377 - -
Rops10g01543 473 ProSiteProfiles S5 double stranded RNA-binding domain profile. 316 379 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops10g01543 473 PANTHER RIBOSOMAL S SUBUNIT 97 469 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops10g01543 473 FunFam 30S ribosomal protein S5 266 377 - -
Rops10g01543 473 Pfam Ribosomal protein S5, C-terminal domain 395 462 IPR005324 GO:0003735|GO:0005840|GO:0006412
Rops10g01543 473 SUPERFAMILY dsRNA-binding domain-like 311 381 - -
Rops10g01543 473 Coils Coil 286 309 - -
Rops10g01543 473 FunFam 30S ribosomal protein S5 381 472 - -
Rops10g01543 473 Pfam Ribosomal protein S5, N-terminal domain 316 380 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops10g01543 473 Gene3D - 381 470 IPR014721 -
Rops10g01543 473 MobiDBLite consensus disorder prediction 86 111 - -
Rops10g01543 473 SUPERFAMILY Ribosomal protein S5 domain 2-like 385 463 IPR020568 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01543 K02988 - jre:108980411 710.679