Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01539 ATGGAAACAGAAACAGGTGGTGGTCCTGAAGGTCTCAAGCCTGGAGTTGGGATGGATGTCATGAATATGCTTCTTGTACCTGGGCTTATTGCTCTCATGGTGTTGGTGGGTTTTGGGGAGTTACAAGTCAGTTCCATTTTTTTGGCGCTCACCACCACAACCCAATGCCATATCCAACAATCCAACACCATTGCAAATCTTCCATTGTCTCGTTTCGGCTACTCACAATTTAGAAAATCTTCTATACGACGAGGAATATCTATCTATCAAAATATGGTAGAAGCAGGGAAAGAAGAGGAACTTGAATTCAAGTGGGGCAAAAAGGGAAGGGTTGGTGGTAAAAAGAAGGATGTGCAATTTTACGAATCGTTTACCTACGATGGCGAGAACTACACCCGTTTCGATTCGGTGTTTCTTTACAAGGAAGGTGAACCTGAGCCTTATGTTGGTAAACTCATTAAAATTTGGGAGAATGCTGATAAGAGCAAGAAAGTTAAGGTTCTGTGGTATTTCCGTCCTTGTGAGATTATGAACTTCTTGGAAGGATGTGAGCCACTTGATCATGAGTTGTTTTTGGCATGTGGTGAAGGCTCGGGGCTTTCAAATGTCAATCCCCTGGAAGCTATTGCTGGGAAATGCAATGTTGTTTGCATTTCTAAGGACAGCAGGAATCCATATCCATCAGATGAAGCACTTCAAATGGCTGACTTTGTATTCTCTCGTTTCTTTGATGTTGGGGAGTGTAAAATACTGGATCAGATAGGAGATCAGATTGCTGGAACTGAAGTTAAAAATATTTTTAACAATTTAGATAGTCAAAAGCTTGTTGGTCTTGTGAAACTTGGTTTAGACGGGAACAATGTTAGTGGGAACATCACGACAAGTAATGAAGAGGTGGCTCTTTCGAGTCAAAAAATTAGTCAGCCTTTGATTCAAAAACCAGGTGGCAAATGTTTTGACACATTAGTTAGTGAAAATGCCGATTCAAAGTCATTGTTGGGAGAAAAACCTACCTCTGGAGTTGGTTTAAAGGAAGAAAGTAAATCTAACGATGCCTCGGACACTATTTCCAATGACAAGACCTTGCCTCAAGCTAAAGTTAAAGAAAATGGGGGTTATAAGGCTTCTTTGGTTAAACAAAAATCATTTACTAAACTATCATATGGTTCTAGAGCTGGTTCAGAAACGAGGGAAATAGCTAAAATGGATAATCGACGGGAAAATGTCTCTATTGAGAAGACCAATTTGAGGTCGAAGGTTGAGTCAGAAGGGGATGAACGTGAGGTTGTTGTCCCTGTTGGACAACTCAACAAGGAATTGATGGGGGACAAGGCTTTTGAGAAGGATAAATATGGTGGTTCTAGTAAAGTTTCTAGTGCGAAGATAAAAAATAACGTGCAAAATCGAAGGACCTATGGTGATGATGTGAAGAGTGTAGCTCCATCTTCATCAAAGGATAAATATAAGCTTCAACGAGAAAAGGATTTTTGTGATGTGGAGGAGGTCCCTTCCAAAAAGTTAAAGATTGACACGAAGCCAACAAAACTCTCTAACGACAAGTTGCGTAAAGAATCTTCTATGGTTTCTTCGAATGTGGAACACAAGCTAGATTACCGTGAAACGGAAGTTACTCGAAGACCTGATGTTGATAAAAGCAAGTGGTTTAAGGGCTTTCCTTGGGAAGAAAGAATGAAATCTGCTTACGAGCAAGGAAAACTTGTGCTACTTGAAAATTTAGATCCATCTTTAACTTCATCCGAAGTACAGGATATTATTTGGCAAGGCTTCAAAGAAAGTTGCACTGCAAAGATGATCCAGAAAACAGCATATTCTAGCCGTCATTCTGGTAAAGCTTTTGTTATATTTAAAAGAAAGGAAGTAGCAGAGTTGGTTGTTAGAAAATTAGACGAGGGTTGTTTGTTAATGTCCAATGGGCGCCCACTTGTTGGAAGTGTTGGACATCCTTGCTTTCCAGAAAAGAAGCCAACATTTTATGGTCATCATGTTGTCGATCAACTTCGTTTGCAAATGCAACGGGAGATGAAAGATGCTGTATCTACTTCACATTGTTCTCAGCCCAACAATATTGAATATGATATGGCCATAGAATGGTGCTTACTACAAGAAAGAGCAGACAAATCATGGAGAAGATTATATCAGCGACAAGGCGAGGAGTTGAGTAAACTCAAAGCTAAGCTGAAGTCTAAAGTCTAA 2214 0.3993 METETGGGPEGLKPGVGMDVMNMLLVPGLIALMVLVGFGELQVSSIFLALTTTTQCHIQQSNTIANLPLSRFGYSQFRKSSIRRGISIYQNMVEAGKEEELEFKWGKKGRVGGKKKDVQFYESFTYDGENYTRFDSVFLYKEGEPEPYVGKLIKIWENADKSKKVKVLWYFRPCEIMNFLEGCEPLDHELFLACGEGSGLSNVNPLEAIAGKCNVVCISKDSRNPYPSDEALQMADFVFSRFFDVGECKILDQIGDQIAGTEVKNIFNNLDSQKLVGLVKLGLDGNNVSGNITTSNEEVALSSQKISQPLIQKPGGKCFDTLVSENADSKSLLGEKPTSGVGLKEESKSNDASDTISNDKTLPQAKVKENGGYKASLVKQKSFTKLSYGSRAGSETREIAKMDNRRENVSIEKTNLRSKVESEGDEREVVVPVGQLNKELMGDKAFEKDKYGGSSKVSSAKIKNNVQNRRTYGDDVKSVAPSSSKDKYKLQREKDFCDVEEVPSKKLKIDTKPTKLSNDKLRKESSMVSSNVEHKLDYRETEVTRRPDVDKSKWFKGFPWEERMKSAYEQGKLVLLENLDPSLTSSEVQDIIWQGFKESCTAKMIQKTAYSSRHSGKAFVIFKRKEVAELVVRKLDEGCLLMSNGRPLVGSVGHPCFPEKKPTFYGHHVVDQLRLQMQREMKDAVSTSHCSQPNNIEYDMAIEWCLLQERADKSWRRLYQRQGEELSKLKAKLKSKV* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01539 737 Pfam BAH domain 135 220 IPR001025 GO:0003682
Rops10g01539 737 Gene3D - 98 253 IPR043151 -
Rops10g01539 737 Coils Coil 399 419 - -
Rops10g01539 737 ProSiteProfiles BAH domain profile. 129 254 IPR001025 GO:0003682
Rops10g01539 737 SMART BAH_4 129 255 IPR001025 GO:0003682
Rops10g01539 737 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 572 655 IPR000504 GO:0003723
Rops10g01539 737 FunFam Bromo-adjacent homology (BAH) domain-containing protein 99 250 - -
Rops10g01539 737 MobiDBLite consensus disorder prediction 330 362 - -
Rops10g01539 737 PANTHER PROTEIN ANTI-SILENCING 1 93 736 - -
Rops10g01539 737 SUPERFAMILY RNA-binding domain, RBD 563 646 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01539 Rops-Chr10 28670783 28691667 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01539 - - aprc:113865076 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01539 10 28670783 28691667 Rops10g01539 10 28670783 28691667 ECH