Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01530 ATGCTCACACATCCAAAAAAATCGACTTTGCCAGATAAATTCACATTCCCGTTTGTGATAAAGTCATGTGCGGGGCTTCTTTGCCGTCATGTTGGTCAGCAAATTCACGCGCAAGTTTGCAAATTTGGGCCCGAATCACATTCGATAACAGAGAACGCACTGATTGATATGTATACTAAATGTGGTGATTTGAGTGATGCATGCCAAATGTTTGAACAAATGACTGAGCGAGATGCAGTTTCTTGGAATGGCTTAATCTTTGGATACGTGAGATTGGGGCAGATGATGAGTGCAAGGGCCTTGTTTGATGAAATGCCTTGTAGGACAATCGTGTCTTGGACAACTATGATAACTGGGTATGCTAGGGCAGGGTGCTATGTTGATGCATTGGACATTTTCCGCAAGATGCAAATGGAGGGTATTGAACCTGATGAGATTAGTATTATAGCTGTTCTGCCGGCATGTGCACAGCTTGGAGCTCTTGAGGTTGGGAAATGGATTCATATGTACTCGGACAAAAACGAGTTTTTGCAGCAGACTGGTATATGCAATGCACTGGTTGAAATGTATGCCAAGTGTGGTTGCATTGATGAAGCTTGGCGCTTGTTTGATAGGTTGGTTGAGAAGGATGTGATTTCTTGGAGTACCATGATTGGAGGGCTAGCTAATCATGGAAAAGGTTATGCGGCAATTCAACTCTTTCATGACATGCAGAAAACACAAGTCGCTCCTAATGGAATAACCTTTCTTGGTGTTCTGTCAGCTTGCGTTCATGCAGGCTTATGGAATGAGGGATTGAAATATTTTGATGTTATGAGGGTCGATTATCATATTGAACCAGAAATTGAGCACTATGGTTGCCTAGTTGATCTTCTAGGACGCTCGGGACGTCTTGATCAGGCTCTTGACACGATATTGAGAATGCCGATAAAGCCAGATGCAAGGATATGGAACTCTTTGTTAAGCTCTTGCAGAATTCATCGCAATCTTGAGATTGCTGTTATTGCAATGGAACAGCTTTCAGAGCTTGAGCCAGAGGAATCTGGGAACTATGTTTTGCTGGCTAACATATATGCAGAACTTGGCAAGTGGGAAGGCGTATCAAATATTAGGAAACTCATAAGAAGCAAGAGGATAAAGAAAACCCCGGGGTGTAGTTCGATTGAGGTTAACAATGTGGTTCAAGAATTTGTATCAGGAGACGATTCAAAGCCCTTTTCAAAAGATGTCTTTTGGATCCTAGAAGGGCTGGCTTTACACCAAACTAGAACTCATGACTTGATGGAATTTGTCGAAGGTGATGCAGATCAAGTTTGTAGTTAA 1323 0.4233 MLTHPKKSTLPDKFTFPFVIKSCAGLLCRHVGQQIHAQVCKFGPESHSITENALIDMYTKCGDLSDACQMFEQMTERDAVSWNGLIFGYVRLGQMMSARALFDEMPCRTIVSWTTMITGYARAGCYVDALDIFRKMQMEGIEPDEISIIAVLPACAQLGALEVGKWIHMYSDKNEFLQQTGICNALVEMYAKCGCIDEAWRLFDRLVEKDVISWSTMIGGLANHGKGYAAIQLFHDMQKTQVAPNGITFLGVLSACVHAGLWNEGLKYFDVMRVDYHIEPEIEHYGCLVDLLGRSGRLDQALDTILRMPIKPDARIWNSLLSSCRIHRNLEIAVIAMEQLSELEPEESGNYVLLANIYAELGKWEGVSNIRKLIRSKRIKKTPGCSSIEVNNVVQEFVSGDDSKPFSKDVFWILEGLALHQTRTHDLMEFVEGDADQVCS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01530 440 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Rops10g01530 440 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8 419 IPR046960 GO:0003723|GO:0009451
Rops10g01530 440 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 183 412 - -
Rops10g01530 440 Pfam E motif 327 389 IPR046848 -
Rops10g01530 440 Gene3D Tetratricopeptide repeat domain 33 177 IPR011990 GO:0005515
Rops10g01530 440 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 47 81 IPR002885 -
Rops10g01530 440 SUPERFAMILY TPR-like 57 365 IPR011990 GO:0005515
Rops10g01530 440 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 143 IPR002885 -
Rops10g01530 440 NCBIfam pentatricopeptide repeat 182 211 IPR002885 -
Rops10g01530 440 NCBIfam pentatricopeptide repeat 52 78 IPR002885 -
Rops10g01530 440 NCBIfam pentatricopeptide repeat 111 145 IPR002885 -
Rops10g01530 440 NCBIfam pentatricopeptide repeat 212 245 IPR002885 -
Rops10g01530 440 NCBIfam pentatricopeptide repeat 80 106 IPR002885 -
Rops10g01530 440 Pfam PPR repeat 52 77 IPR002885 -
Rops10g01530 440 Pfam PPR repeat 80 107 IPR002885 -
Rops10g01530 440 Pfam PPR repeat 284 308 IPR002885 -
Rops10g01530 440 Pfam PPR repeat family 109 156 IPR002885 -
Rops10g01530 440 Pfam PPR repeat family 209 257 IPR002885 -
Rops10g01530 440 Gene3D Tetratricopeptide repeat domain 179 402 IPR011990 GO:0005515
Rops10g01530 440 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 209 IPR002885 -
Rops10g01530 440 FunFam Pentatricopeptide repeat-containing protein chloroplastic 34 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01530 Rops-Chr10 28613801 28615123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01530 11 417 Glycoside Hydrolase AT3G49170 32.187 9.96e-77 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01530 - - ccaj:109797549 741.88