Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01526 ATGGGTATAACAGAAGCATGCTCCCGATTCATCGGGGACTTTTTACAAGCATTCAAATGCTCACCACCAAGCTCAATGTCTCAGCTTGATCATAATCATCAACCTATCTGCAAGCCCCAGAACATGCTCAAACTAGATGACAAGATGGTTTGTGCTCTTGTTACTGTCTTTGGCATGGAAACAAATGGAAGAATCAAGAAGGAAAGTGCTAAGAAGGTGGTGGAGAAGCTTGGTTTGATGTATGGTTCTGAGAAGGAGAAGCCCTCAGGATTTGAACTATCAGGTGAGGGCGGCTTAGAAGATGATGAAGTGCCTGTAGAAGAGGTGCTTGGTGAATTGGAGGACATGTCAAAGCGCAGTGAGCTATTACATGAAGCCTTCAAAATCTTTGATGAAGATGGGGATGGATACATAGATGCAATGGAATTGAAGAGGGTGCTTGATTGCTTGGGTTTGGATAAAGATTGGGATATGAATACAATTGAGAAGATGGTGAAGGTTGTAGATTTGAACTTTGATGGCAAGGTTGATTTTGGGGAGTTTGAATTGATGATGGGATAG 561 0.4242 MGITEACSRFIGDFLQAFKCSPPSSMSQLDHNHQPICKPQNMLKLDDKMVCALVTVFGMETNGRIKKESAKKVVEKLGLMYGSEKEKPSGFELSGEGGLEDDEVPVEEVLGELEDMSKRSELLHEAFKIFDEDGDGYIDAMELKRVLDCLGLDKDWDMNTIEKMVKVVDLNFDGKVDFGEFELMMG* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01526 186 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 100 185 - -
Rops10g01526 186 ProSiteProfiles EF-hand calcium-binding domain profile. 156 186 IPR002048 GO:0005509
Rops10g01526 186 SMART efh_1 122 150 IPR002048 GO:0005509
Rops10g01526 186 SMART efh_1 160 186 IPR002048 GO:0005509
Rops10g01526 186 CDD EFh 123 181 IPR002048 GO:0005509
Rops10g01526 186 SUPERFAMILY EF-hand 53 185 IPR011992 -
Rops10g01526 186 Pfam EF-hand domain pair 122 185 IPR002048 GO:0005509
Rops10g01526 186 FunFam Calmodulin A 44 186 - -
Rops10g01526 186 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Rops10g01526 186 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Rops10g01526 186 Gene3D - 29 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01526 Rops-Chr10 28564376 28564936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01526 123 185 EF-hand Containing Proteins AT5G44460 55.556 4.23e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01526 - - gmx:100527700 273.863