Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01512 ATGCTTCAATACCCCGCCACTCTCACTCCTCACTGGTCATCTTCCGTTTGTGGTTCTTTCTATTCGCGTTCCCTTTCGACGAGTTCTAAACCTATGAGTTGCTGGGAAGGCGTTCAGGAAACCCGTGTTCTCGTTGCACCTGATCCTGGTACAAATGGAAATGGTTCGGGACGTATGATATTGCTCCGTCATCCCAAGTCTGGAAATGCAGCACAATATCTCTTTGTAAACGGGGCGCTTCAAGAACTTCAATGGTTTAAGAACTTAAATGGATCTTGGTTTTTGGGAGATTATATAAGTGAAGATGGTCGGCTGTATTTATCCACGCCAATTGATCCTGTTTTCATCATGTTGCCCATATTTGAGGAAGCTAGAATGAAGAAAGGGGATGATCTTGGGAAGTTCAGGCAATTGGATGAGATCTTGTTTATTGATGGGTATCCTGGATATCAGCAGTTAATGTCCATTGTGGAGAACTGTATGCAAGTAGTTTGTGAAGTCAAAGAAGTTGGATCCTCAAAATTCTTCAGGCTTGATGACTCTAAGGTTCTACGTTGGCTGTGCTATAAGGTGTGTCAGCTAAAACAGACACTACCCAAATTGGACAAAAACTATGCTGTGCAATCAGAGAAAGACACATTGGTTGATGCAGTCTCTATATTAGGAGAGTATTTGAAGGAAGAGCCTTGGTTGCAGCGTTTGTGTGACCATCTTAAGTTAAATATACTTGAGGTTACTGAAAAAGCACAAGAAAAAGCTGAAGGAAATAACTCAGGTTCATGTAATGAATTACAGGAACAGAGTGATGATAAGAAGGCTACAATTACAAAGAAGGGTAGGGCAGCAAAGAAGCTCTTCATTGTCCCACCGTTCTACTGCATTATCATCTCCTTTCGTCTTGGAGACTCAACCTCTTCCTTCTCTCTCTATCTCTCTGTATGCAGGTGTTCTTTCTTCTTCAGCTGCAACAACAAGGTTTCAAGAAAGCTTATAAAAAAGAAAGGAGAACATCTGTTTTCTGCAGCTCCGATGGCAGGGCTAAATTTTGAAGCCACATATACTTATAGCCATGATGTTCTGAAGATATTTGCAGCTGAAGGTGTTGAGTTCCTTTTATCACGTGAAGGGAAGGTACCCTTGTCGGAATGCAATGGGATCATCTGCCTATTTTTCTCTGGGAACTGGTGCAGGCCTTGTAGAGCTTTCATTCCCCGTCTGGTTGAACTTTATGAAACACTGAGAAAGAGGGGAATTAATCTAGAGATCATCTTCATCTCCTTTGACCATGATGAGGATGGATTTAAAGAACACTTCAAGAGTATGCCATGGCTAGCCGTCCCATTTGATGTAAATTTGCATAGAAGACTGATTGACAGATACCGAGTTGATCGAATCCCATCATTCATTCCATTATGTTCGGATGGCATAACTGTTGAAGAAGACTTGATTGGGTGCATTGAGGATTATGGAGCTGATGCATTTCCTTTCACAAGGAAGAGACATGAAGAATTGAAAGCCATAGATAAAAGGAAACGTGAAGAAGCAAATTTGGAAGAGTTATTGGCACATGAAGGACGCAACTTTCTCATCTCCGGAGATGATAGAAAGGTACCTGTATCTGAACTAGCTGGTAAAACTGTAGGCCTATATTTCTGTGCCTACTGGTCTCCTCCTTGCCGTGCCTTCACTGTCCAACTTATTGATGTATACAACGATCTCAAGGCTGCAAAAGGCCACTGCTTTGAGATTGTTTTAATCTCAACAGATAAGGATCTTAAAGAATTCAATGTCAACATGAGTAGTATGCCATGGCTTGCTATCCCATATGAAGACAGGACAAAACATGACCTTTGTAGAATCTTTGATATAAAAGGAATTCCAGCTTTGGTTCTCATTGGACCAGATGGCAAAGTCATTAGTATGAATGGGAAGTTTATGGTCTCCTCATATGGTGCAGAAGCTTTCCCATTTACTGAATCACGGATAAGAGAGCTAGAAACTGCTCTGAGAAAGGAAGGAGAGGCTTTGCCTCAACAGGTTGAGGATGTCAAGCATGAACATGTACTGAAATTGGATATGGCCAAAGCATATTTGTCTAGAAAAGGTCAACAACGACCAAAGTTGGTAGAGAATAGAATCACTGAAGTTTGCAACCAGTTCTATCGATTAGCTACTTTTGCAGTGATGGAATTCAAGTTGTCAAACTGA 2208 0.413 MLQYPATLTPHWSSSVCGSFYSRSLSTSSKPMSCWEGVQETRVLVAPDPGTNGNGSGRMILLRHPKSGNAAQYLFVNGALQELQWFKNLNGSWFLGDYISEDGRLYLSTPIDPVFIMLPIFEEARMKKGDDLGKFRQLDEILFIDGYPGYQQLMSIVENCMQVVCEVKEVGSSKFFRLDDSKVLRWLCYKVCQLKQTLPKLDKNYAVQSEKDTLVDAVSILGEYLKEEPWLQRLCDHLKLNILEVTEKAQEKAEGNNSGSCNELQEQSDDKKATITKKGRAAKKLFIVPPFYCIIISFRLGDSTSSFSLYLSVCRCSFFFSCNNKVSRKLIKKKGEHLFSAAPMAGLNFEATYTYSHDVLKIFAAEGVEFLLSREGKVPLSECNGIICLFFSGNWCRPCRAFIPRLVELYETLRKRGINLEIIFISFDHDEDGFKEHFKSMPWLAVPFDVNLHRRLIDRYRVDRIPSFIPLCSDGITVEEDLIGCIEDYGADAFPFTRKRHEELKAIDKRKREEANLEELLAHEGRNFLISGDDRKVPVSELAGKTVGLYFCAYWSPPCRAFTVQLIDVYNDLKAAKGHCFEIVLISTDKDLKEFNVNMSSMPWLAIPYEDRTKHDLCRIFDIKGIPALVLIGPDGKVISMNGKFMVSSYGAEAFPFTESRIRELETALRKEGEALPQQVEDVKHEHVLKLDMAKAYLSRKGQQRPKLVENRITEVCNQFYRLATFAVMEFKLSN* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01512 735 PANTHER THIOREDOXIN 351 677 - -
Rops10g01512 735 SUPERFAMILY Thioredoxin-like 531 640 IPR036249 -
Rops10g01512 735 Pfam Thioredoxin-like 386 471 IPR012336 -
Rops10g01512 735 Pfam Thioredoxin-like 544 638 IPR012336 -
Rops10g01512 735 Gene3D - 111 239 - -
Rops10g01512 735 ProSiteProfiles Thioredoxin domain profile. 519 667 IPR013766 -
Rops10g01512 735 Gene3D Glutaredoxin 364 500 - -
Rops10g01512 735 Pfam Ydr279p protein triple barrel domain 56 112 IPR041195 -
Rops10g01512 735 SUPERFAMILY Thioredoxin-like 386 487 IPR036249 -
Rops10g01512 735 ProSiteProfiles Thioredoxin domain profile. 359 512 IPR013766 -
Rops10g01512 735 Gene3D - 39 110 - -
Rops10g01512 735 CDD RNase_H2-B 43 196 IPR040456 GO:0032299
Rops10g01512 735 FunFam Ribonuclease H2 subunit B 40 110 - -
Rops10g01512 735 FunFam Ribonuclease H2 subunit B 111 239 - -
Rops10g01512 735 CDD TryX_like_TryX_NRX 527 657 IPR045870 GO:0004791
Rops10g01512 735 Gene3D Glutaredoxin 521 659 - -
Rops10g01512 735 Pfam Ydr279p protein family (RNase H2 complex component) wHTH domain 115 203 IPR019024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01512 Rops-Chr10 28438733 28449331 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01512 K17609 - gmx:100778160 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01512 10 28438733 28449331 Rops10g01512 10 28438733 28449331 ECH