Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01479 ATGAACTCGTGCGCCATATCCGAACCCGTGAGGTCCTCGGCCACGGCCTCTTCTTCACCAGTGTTGCAGGTGCCGGAGCAAGATGGTAACGAAATGGACCGTGTATCCGACCAAACATTTCGAAGGTACACTTCCTCCAACCCCAAGAGAAGTGGCAAAGGTACAGCCATTGTTTGGTTCAGAAACGATCTTAGAGTTTTGGATAATGAAGCTCTCTATAAGGCTTGGCTTTCTTCTGAGACTCTGTTACCTGTCTATTGTGTTGATCCTCGACTCTTTGCCACTACTTATCACTTTGGCTTTCCAAAAACTGGAGCATTGAGAGCCCAATTTCTCATTGAATGCTTGGCTGACTTGAGGAAGAATTTGATGAAACGGGGACTTAATTTGCTTATTCAACATGGCAAACCTGAAGATATTCTTCCTTCTCTTGCAAAAGGTTTTGAAGCTCATACGGTTTATGCACAGAAAGAAACTTGCAGTGAGGAGCTTAATGTTGAAAGGTCAGTTATTAGAGGTCTTAAACAAGTGGTGATACCACCTGAGAAATCTACTGCTGTGACAGATTCAAACTATATCCCCAAGTTACAATTTATTTGGGGTACCACCATGTACCACCTTGATGATCTCCCTTTTGATGCTACTTGTTTGCCAGATGTTTATACTCAATTTCGTAAGACTGTTGAAGCCAAATGTACCATACGAACATGCATCAAAATTCCAGCTACTCTTGGACCACCCTCTATGATTGAGGATTGGGGAAGTCTTCCTACCTTAGAACAGCTGGGACTTTGCTCACAAAATGTTAGCAAAGGGATGAAATTTTTGGGGGGTGAAACTGCGGCATTGAGCAGAGTTTATGAATACTTTTGGAAGAAGGATTTGATAAAGGTATATAAAGAGACCAGAAATGGGATGTTAGGGCCTGATTATTCTACTAAATTCTCACCATGGCTTGCTTCAGGAAGCTTGTCTCCTCGTTTCATACATGGAGAGGTGAAGAGATATGAGAATGAAAGACAAGCAAATAGTTCTACCTACTGGGTTTTGTTTGAGTTGATATGGAGGGATTACTTTAGGTTTTTATCAGTGAAATATGGCAATTCACTTTTCCATTTAGGTGGGCCTAGGAAAATTCAGCATAATTGGAGCCAAGACAAGATTTTGTTTGAATCCTGGAGGGATGGTCGTACAGGGTATCCTCTAATAGATGCCAACATGAAAGAACTGTCAGCTACAGGGTTTATGTCAAACCGAGGACGGCAGATTGTGTGTTCCTTTCTTGTTCGTGATATGGGCATAGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGATCAGGAGTTGGGAATGATCCCAGAGAAGACCGTTATTTCAGCATCCCAAAACAAGCTCAAACATATGACCCTGAAGGTGAATATGTTGCATACTGGTTGCCACAGTTACGAACAATCCCAAAAGACAAAAGGAACTTTCCTGGAAATTTATACATTCGTCAAATTGTGCCTCTCAAGTTTGGAACAGCTGGTAGACACAATAAGGAGGACAAGTCCCTTGGTGCAAGAAGAGGCAATGATAGAGGAAGTGAAAGAAGATGGAACAGGAGATAA 1659 0.4201 MNSCAISEPVRSSATASSSPVLQVPEQDGNEMDRVSDQTFRRYTSSNPKRSGKGTAIVWFRNDLRVLDNEALYKAWLSSETLLPVYCVDPRLFATTYHFGFPKTGALRAQFLIECLADLRKNLMKRGLNLLIQHGKPEDILPSLAKGFEAHTVYAQKETCSEELNVERSVIRGLKQVVIPPEKSTAVTDSNYIPKLQFIWGTTMYHLDDLPFDATCLPDVYTQFRKTVEAKCTIRTCIKIPATLGPPSMIEDWGSLPTLEQLGLCSQNVSKGMKFLGGETAALSRVYEYFWKKDLIKVYKETRNGMLGPDYSTKFSPWLASGSLSPRFIHGEVKRYENERQANSSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGPRKIQHNWSQDKILFESWRDGRTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRTIPKDKRNFPGNLYIRQIVPLKFGTAGRHNKEDKSLGARRGNDRGSERRWNRR* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01479 552 NCBIfam DASH family cryptochrome 55 497 IPR014133 GO:0003913|GO:0006281
Rops10g01479 552 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 273 509 IPR036134 -
Rops10g01479 552 Gene3D HUPs 19 201 IPR014729 -
Rops10g01479 552 PANTHER CRYPTOCHROME 54 517 IPR002081 -
Rops10g01479 552 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 53 251 IPR036155 -
Rops10g01479 552 Gene3D - 202 371 - -
Rops10g01479 552 Pfam DNA photolyase 56 236 IPR006050 -
Rops10g01479 552 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 54 189 IPR006050 -
Rops10g01479 552 MobiDBLite consensus disorder prediction 527 552 - -
Rops10g01479 552 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 372 526 - -
Rops10g01479 552 MobiDBLite consensus disorder prediction 1 25 - -
Rops10g01479 552 PRINTS DNA photolyase signature 418 436 IPR002081 -
Rops10g01479 552 PRINTS DNA photolyase signature 398 414 IPR002081 -
Rops10g01479 552 PRINTS DNA photolyase signature 457 471 IPR002081 -
Rops10g01479 552 MobiDBLite consensus disorder prediction 1 35 - -
Rops10g01479 552 Pfam FAD binding domain of DNA photolyase 351 505 IPR005101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01479 Rops-Chr10 28107698 28113059 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01479 K25656 - gmx:100783312 984.941