Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01431 ATGGGTACTGCTCCTGCTAGATACCCATTTAGAACCCTTTTCCACTCTCAGGGTGCTCTCTCTCCCAAACTGGATTGCTCAACCTCCCAGTTCCCCCTTCACGTGGACCTTTCGACAATTAACTTGTGCCCACGTTTTGCTTCCAAGAGGCTAATTGATCGAGTATGTGCACGACCTGATATTGATGATTTCTACTGGGAGAAAGTTCCGACACCCATTCTTGACACAGTTGAAAATCCCCTTTGCTTGAAGAACTTATCTCTTAAGGAACTGAAACAACTAGCTGATGAAATCCGTTTGGATTTGTCTTCTATTATGTCAGGTACACAAATATCCCTGAAGGCAAGTATGGCAGTGGTGGAGCTGACAGTTGCAATACATCATGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACAGGAAGGCGATCACTCATGAAGACAATGAGACAAAAGAATGGCCTTTCTGGTTTTACTTCCCGATTTGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAACAGCATTTCTGCTGGACTTGGCATGGCAGTTGCACGGGATATTAAGGGGAGGCGAGAGCGTGTAGTTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGTGTATGAGGGAATGGGCAATGCAGGATATTTGGACTCAAATATGGTGGTGATTTTGAATGACAGCCGTCACTCTCTACTTCCAAAAATAGAGGAGGGCCCAAAAACATCTGTCAATGCCCTATCTAGTACCCTAAGCAAACTCCAGTCCAGTAAATCTTTCCGAAGATTTCGAGAAGCTGCTAAAGGCGTTACAAAACGAATTGGTATGCATGAATTGGCAGCTAAAGTTGATGAATATGCTCGAGGTATGATGGGTCCACTAGGTTCTACTCTTTTTGAAGAGCTTGGGTTGTACTACATTGGCCCAGTGGATGGACACAATGTTGAAGATCTAATATGTGTTCTGGAAGAAGTAGCTTCCCTGGATTCAATGGGTCCTGTCTTGGTTCATGTGATAACTGATGAAAATGAGGGAGAAGAAAAGAATCAGAAAAGTGATGTGACAGACAGGCAGCAGGACGATTCTGTGATATCTGATTCATTAGATTATGCTGTTCGACCTCGAACATATGGTGATTGCTTTGTGGAGACATTGGTTGCAGAAGCAGAGAAAGACAAAGATATTGTGGTTGTTCATGCAGGAACCATGATGGAGCCATCACTCGAACTGTTTCAGGAAAAATTTCCAGATAGGTTTTTTGATGTGGGAATGGCTGAGCAACATGCAGTCACATTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTACTTTTCTACAAAGAGCCTATGACCAGGTGGTCCATGACGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTCCAATGTGGAGCATTTGATATAACCTTTATGTCATGCTTACCAAACATGATTGTCATGGCGCCATCTGATGAGGTTGAACTCATGCACATGGTGGCTACTGCTACTCATATCAATGATCGGCCAGTTTGCTTTCGGTATCCTAGGGGTGCCTTGGTTGGGAAAGACAACTCTATATGTGATGGAATCCCTATTAAGATTGGAAAAGGAAGAGTTCTTGTTGAAGGTAAAGATGTTGCTTTGCTGGGATATGGATCAATGGTTCAGAACTGTCTAAAGGCTCATTCACTTCTTGCAAAGCTTGGTGTTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCACTTGACATCAAGCTTCTGAGGCAGCTTTGTAAACACCATTCTTTTCTAATTACTGTTGAGGAAGGATCTATTGGAGGATTCGGTTCCCATGTTGCTCAATTTATTGCACTTGATGGACTGCTTGATGGAAGAATCAAGTGGCGACCAATTGTCTTACCAGACAGTTATATTGAGCATGCATCTCCAAATGAGCAGCTTGACCAAGCGGGGTTGACTGGACATCACATTGCTGCCACAGCATTGAGTTTGCTAGGCCGTACCCGTGAAGCTCTCCTGTTTATGTGTTCATGA 2139 0.4357 MGTAPARYPFRTLFHSQGALSPKLDCSTSQFPLHVDLSTINLCPRFASKRLIDRVCARPDIDDFYWEKVPTPILDTVENPLCLKNLSLKELKQLADEIRLDLSSIMSGTQISLKASMAVVELTVAIHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTMRQKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRRERVVAVISNWTTMAGQVYEGMGNAGYLDSNMVVILNDSRHSLLPKIEEGPKTSVNALSSTLSKLQSSKSFRRFREAAKGVTKRIGMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNVEDLICVLEEVASLDSMGPVLVHVITDENEGEEKNQKSDVTDRQQDDSVISDSLDYAVRPRTYGDCFVETLVAEAEKDKDIVVVHAGTMMEPSLELFQEKFPDRFFDVGMAEQHAVTFASGLSCGGLKPFCIIPSTFLQRAYDQVVHDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDRPVCFRYPRGALVGKDNSICDGIPIKIGKGRVLVEGKDVALLGYGSMVQNCLKAHSLLAKLGVEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDGRIKWRPIVLPDSYIEHASPNEQLDQAGLTGHHIAATALSLLGRTREALLFMCS* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01431 712 CDD TPP_PYR_DXS_TK_like 397 550 - -
Rops10g01431 712 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 74 356 IPR005477 GO:0008661|GO:0016114
Rops10g01431 712 Pfam Transketolase, C-terminal domain 569 692 IPR033248 -
Rops10g01431 712 Gene3D - 569 700 IPR009014 GO:0003824
Rops10g01431 712 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 76 698 IPR005477 GO:0008661|GO:0016114
Rops10g01431 712 CDD TPP_DXS 113 361 IPR005477 GO:0008661|GO:0016114
Rops10g01431 712 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 51 707 IPR005477 GO:0008661|GO:0016114
Rops10g01431 712 Pfam Transketolase, pyrimidine binding domain 392 553 IPR005475 -
Rops10g01431 712 MobiDBLite consensus disorder prediction 357 376 - -
Rops10g01431 712 SMART Transket_pyr_3 391 556 IPR005475 -
Rops10g01431 712 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 569 701 - -
Rops10g01431 712 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 390 579 IPR029061 -
Rops10g01431 712 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 71 452 IPR029061 -
Rops10g01431 712 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 390 558 - -
Rops10g01431 712 SUPERFAMILY TK C-terminal domain-like 564 700 IPR009014 GO:0003824
Rops10g01431 712 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 73 701 IPR005477 GO:0008661|GO:0016114
Rops10g01431 712 Gene3D - 66 363 - -
Rops10g01431 712 Gene3D - 391 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01431 Rops-Chr10 27422877 27429521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01431 429 651 Acyl Lipid Metabolism Gene Families AT1G55510 23.457 4.26e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01431 K01662 - gmx:100787937 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01431 10 27422877 27429521 Rops10g01431 10 27422877 27429521 ECH