Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01415 ATGGAAGCAACTGGTGGAATGGTTGCTGGGTCTCATAAAAGGAACGAGCTTGTTCGGATTCGCCACGATTCTTCTGACAGTGGGTCTAAACCTTTGAAGAATTTGAATGGCCAAATCTGTCAAATATGTGGTGATACTGTTGGATTAACAGCCACTGGTGATGTCTTTGTTGCTTGCAATGAGTGTGCCTTCCCAGTTTGTCGTCCTTGTTATGAATATGAGAGAAAAGATGGGAACCAGTCCTGCCCTCAATGCAAGACTAGATACAAAAGACACATAGGGAGTCCCCGAGTGGAGGGAGATGATGATGAAGATGATGTTGATGATCTAGAGAATGAGTTCAATTATGGCCAAGGAAATAGCAAGGCAAGGTTACAGTGGGAAAAAGATGCTGACCTCTCTTCATCTTCTAGACGTGATCCTCAACAACCAATTCCCCTTCTCACCAATGGCCAAACGATGTCTGGGGAGATTCTCTGTGCTACACCCGATACTCAATCTGTCCGAACTACTTCAGGTCCTTTGGGCCCATCTGAAAAAGTTCACTCACTTCCCTATATTGATCCGAGGCAACCAGTTCCAGTAAGAATTGTGGACCCATCAAAGGACTTAAATTCTTATGGCCTCGGAAATGTTGACTGGAAAGAAAGGGTGGAAGGTTGGAAGCTCAAGCAGGAGAAAAATATGGTGCAAATGACTGGTAGATACTCTGAAGGGAAAGGAGGAGACATTGAAGGGACTGGTTCTAATGGAGAAGAACTTCAAATGGTTGATGATGCTCGACAACCTTTGAGTCGTGTGGTGCCTATTCCTTCCTCTCAGCTGACCCCTTATCGTGTTGTTATCGTACTCCGGCTGATTATTCTTGGCTTCTTCTTACAATATCGGGTAACTCACCCTGTAAAAGATGCATACCCACTGTGGTTGACATCAGTTATCTGTGAGATTTGGTTTGCCTTATCCTGGATCTTGGATCAATTTCCAAAATGGTCTCCCATTAATCGTGAGACTTATCTGGACAGGCTTGCTTTAAGATATGATCGTGAAGGAGAACCGTCGCAGTTGGCTCCCGTTGATGTTTTTGTTAGTACAGTGGATCCTCTCAAAGAGCCACCTCTTGTAACTGCAAACACTGTCCTGTCTATACTTTCCGTTGATTACCCTGTCGACAAGGTTTCCTGCTATGTATCAGATGATGGTTCAGCTATGTTGACCTTTGAAGCCCTCTCAGAAACAGCTGAGTTTGCAAAGAAGTGGGTGCCCTTTTGCAAAAAGCACAATATTGAGCCAAGAGCCCCCGAGTTTTATTTTGCCCAGAAGATTGATTACTTGAAGGACAAGATTCAACCCTCTTTCGTAAAGGAGCGACGAGCAATGAAGAGAGAATATGAAGAATTCAAAATACGGACCAATGCCCTTGTAGCCAAAGCTCAGAAGATGCCAGAGGAAGGTTGGACAATGCAGGATGGAACTCCTTGGCCTGGAAATAATCCTAGGGATCATCCTGGAATGATTCAGGTGTTTTTAGGTCATAGTGGAGGGCTTGATACAGATGGGAATGAGCTGCCTAGACTAGTGTATGTTTCTCGTGAGAAGCGACCTGGCTTCCAACATCACAAGAAGGCTGGAGCTATGAATGCTTTGATTCGAGTTTCTGCTGTCTTGACCAATGGTGCATATCTTTTGAATGTCGATTGTGACCACTATTTCAATAGTAGCAAAGCTCTTAAAGAAGCCATGTGTTTCATGATGGATCCTGCTCTTGGAAAGAAGACATGCTATGTGCAATTCCCTCAGAGGTTTGATGGCATTGACTTGCACGATCGTTATGCCAATCGCAATATTGTGTTCTTCGATATCAACATGAAAGGTCAGGATGGTGTTCAGGGCCCTGTGTATGTGGGAACTGGTTGCTGTTTCAACAGACAGGCATTGTATGGTTATGATCCTGTTTTGACTGAGGAAGATTTGGAACCTAACATCATTATAAAGAGTTGTTGGGGTTCCAGAAAGAAGGGAAGGGGTGGCAACAAGAAGTATAGTGACAAGAAGAGGGCAGTTAAAAGAACTGAATCCACCATTCCCATGTTTAATATGGAAGACATAGAGGAGGGTGTTGAAGGTTATGATGATGAAAGGTCACTTCTCATGTCCCAGAAGAGCTTGGAGAAGCGTTTTGGACAATCTCCAGTTTTTATTGCAGCCACCTTCATGGAGCAGGGTGGCATTCCACCTTCAACTAACCCTGCAACTCTTCTTAAGGAAGCAATCCATGTTATCAGCTGTGGTTATGAAGACAAGACAGAATGGGGCAAAGAGATTGGATGGATCTATGGTTCTGTGACTGAAGATATCTTGACTGGCTTTAAGATGCATGCTCGTGGTTGGATTTCCATCTATTGCATGCCACCTCGCCCAGCATTTAAGGGTTCTGCTCCCATCAATCTTTCTGACCGTCTCAATCAGGTGCTTCGTTGGGCCTTGGGTTCAATTGAGATCTTACTAAGCAGGCATTGTCCCTTGTGGTATGGCTACAATGGGAGGTTGAAGCCGCTGATGAGGTTTGCTTATATCAACACTATTGTCTACCCCCTCACCTCAATCCCATTGATTGCATACTGTGTGCTTCCTGCATTCTGTCTTCTCACAAATAAATTTATTATTCCCGAGATAAGCAACTTTGCCAGCATGTGGTTCATTCTGCTCTTTGTCTCCATTTTTACTACTTCAATTCTTGAGCTTAGGTGGAGTGGGGTCAGTATAGAAGACTGGTGGAGGAATGAACAGTTCTGGGTTATTGGTGGGACATCTGCACATTTCTTTGCTGTGTTCCAAGGGCTTCTAAAAGTGCTTGCTGGGATTGATACTAATTTTACTGTTACATCAAAAGCATCAGATGAGGATGGGGATTTTGCTGAGCTATATGTGTTTAAATGGACATCACTTCTCATCCCTCCTACAACAGTGCTTATTGTGAACTTGGTAGGGATTGTGGCTGGCGTGTCCTATGCCATAAACAGTGGTTACCAGTCTTGGGGTCCACTATTTGGCAAGCTGTTCTTTGCTATCTGGGTCATTGCCCATCTATATCCATTCTTGAAGGGTCTCTTGGGTAGGCAAAATCGTACCCCAACCATTGTTATTGTTTGGTCCATTCTCCTGGCTTCAATATTCTCCTTGCTGTGGGTTAGGATTGACCCCTTCACCACTGACAACAACAAAGCATCCAATGGTCAATGTGGCATCAACTGTTAG 3255 0.4421 MEATGGMVAGSHKRNELVRIRHDSSDSGSKPLKNLNGQICQICGDTVGLTATGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHIGSPRVEGDDDEDDVDDLENEFNYGQGNSKARLQWEKDADLSSSSRRDPQQPIPLLTNGQTMSGEILCATPDTQSVRTTSGPLGPSEKVHSLPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMVQMTGRYSEGKGGDIEGTGSNGEELQMVDDARQPLSRVVPIPSSQLTPYRVVIVLRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWILDQFPKWSPINRETYLDRLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGSAMLTFEALSETAEFAKKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKIRTNALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNSSKALKEAMCFMMDPALGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGQDGVQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIIKSCWGSRKKGRGGNKKYSDKKRAVKRTESTIPMFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPLWYGYNGRLKPLMRFAYINTIVYPLTSIPLIAYCVLPAFCLLTNKFIIPEISNFASMWFILLFVSIFTTSILELRWSGVSIEDWWRNEQFWVIGGTSAHFFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTTDNNKASNGQCGINC* 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01415 1084 MobiDBLite consensus disorder prediction 94 187 - -
Rops10g01415 1084 FunFam Cellulose synthase 475 649 - -
Rops10g01415 1084 MobiDBLite consensus disorder prediction 137 177 - -
Rops10g01415 1084 MobiDBLite consensus disorder prediction 1 29 - -
Rops10g01415 1084 ProSiteProfiles Zinc finger RING-type profile. 40 86 IPR001841 -
Rops10g01415 1084 Pfam Zinc-binding RING-finger 30 107 IPR027934 -
Rops10g01415 1084 MobiDBLite consensus disorder prediction 14 28 - -
Rops10g01415 1084 FunFam Cellulose synthase 22 113 - -
Rops10g01415 1084 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 262 1051 - -
Rops10g01415 1084 Pfam Cellulose synthase 358 1075 IPR005150 GO:0016020|GO:0016760|GO:0030244
Rops10g01415 1084 CDD mRING-HC-C4C4_CesA 38 88 - -
Rops10g01415 1084 SUPERFAMILY RING/U-box 25 112 - -
Rops10g01415 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Rops10g01415 1084 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 660 IPR029044 -
Rops10g01415 1084 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 658 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01415 Rops-Chr10 27229729 27235976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01415 1 1082 Glycosyltransferase AT4G32410 86.636 0.0 1919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01415 K10999 - gmx:100810567 2153.64