Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01414 ATGGGTAGGAAGGAAATCCAACTATTCGATGAAAAAAGAGATGGATTTTTCTCTGTGTGCGATTTGGGGTACTATCATCCTGGAGGTTTATTTGCCAGTGTTGGTCAAATGGGAATGGGATTTGGTGTGCAACCAAACCCTTCTGATTCCCGTGACAATGGTGGCCTGAAACTTCCCTTTAACGATTTGTATGTTAAATATGTTCAGTCACAGGGTAAAGTTGAGACTGTTGGGGAGGGAGAAGGAGTTAAGACCAAGAAGAAAAAGGGTGGTCTTACACTCAAAGTTAAGGTCAGGAATCCTTCTCTGAGGAGATTGATTAGTGGTGCAATTGCAGGGGCTTTTTCCCGCACCGCTGTGGCACCCTTGGAGACTATAAGGACTCATTTGATGGTGGGAAGCAGTGGCCATTCTACCACTGAGGTGTTCCAAAATATTATGAAAACTGATGGCTGGAAGGGATTGTTTAGGGGTAATCTTGTTAATGTTGTTCGGGTTGCACCTAGCAAGGCCATTGAGCTATTTGCTTATGACACAGTAAACAAAAATCTATCCCCTAAGCCTGGGGAGAAGCCCAAACTCCCAATTCCTGCATCATTGATTGCAGGTGCCTGTGCCGGAGTGAGTTCAACTATATGCACGTATCCTCTTGAATTACTCAAGACTCGACTAACAATCCAAAGAGGTGTTTATGATGGTCTACTTGATGCATTCTTGAAAATAATTAGAGAAGAGGGTCCTGCAGAACTTTACAGAGGCCTCACTCCTAGTCTTATTGGAGTTATTCCATATTCTGCTACCAATTACTTTGCCTATGACACTTTACGGAAGGCTTACAGGAAAGTTTTTAAACAAGAGAAGATTGGCAACATTGAAACCCTTTTGATTGGTTCAGCAGCCGGTGCCATCTCAAGTAGTGCAACTTTTCCACTTGAGGTGACTCGCAAGCACATGCAAGTGGGAGCTCTCAGTGGAAGGCAGATTTACAGAAACGTGTTTCATGCCCTTGCAAGCATACTAGAACAAGAAGGGATCCAGGGTTTATATAGAGGGCTGGGACCTAGTTGCATGAAGTTGGTACCAGCCGCAGGAATCTCTTTCATGTGCTATGAAGCATGCAAGAGAATACTGGTAGATAATGATGAAGAGGAATAG 1155 0.4381 MGRKEIQLFDEKRDGFFSVCDLGYYHPGGLFASVGQMGMGFGVQPNPSDSRDNGGLKLPFNDLYVKYVQSQGKVETVGEGEGVKTKKKKGGLTLKVKVRNPSLRRLISGAIAGAFSRTAVAPLETIRTHLMVGSSGHSTTEVFQNIMKTDGWKGLFRGNLVNVVRVAPSKAIELFAYDTVNKNLSPKPGEKPKLPIPASLIAGACAGVSSTICTYPLELLKTRLTIQRGVYDGLLDAFLKIIREEGPAELYRGLTPSLIGVIPYSATNYFAYDTLRKAYRKVFKQEKIGNIETLLIGSAAGAISSSATFPLEVTRKHMQVGALSGRQIYRNVFHALASILEQEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKRILVDNDEEE* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01414 384 Gene3D Mitochondrial carrier domain 97 382 IPR023395 -
Rops10g01414 384 Pfam Mitochondrial carrier protein 194 281 IPR018108 -
Rops10g01414 384 Pfam Mitochondrial carrier protein 102 184 IPR018108 -
Rops10g01414 384 Pfam Mitochondrial carrier protein 288 380 IPR018108 -
Rops10g01414 384 ProSiteProfiles Solute carrier (Solcar) repeat profile. 194 278 IPR018108 -
Rops10g01414 384 PRINTS Mitochondrial carrier protein signature 105 118 IPR002067 GO:0055085
Rops10g01414 384 PRINTS Mitochondrial carrier protein signature 209 227 IPR002067 GO:0055085
Rops10g01414 384 PRINTS Mitochondrial carrier protein signature 297 319 IPR002067 GO:0055085
Rops10g01414 384 PRINTS Mitochondrial carrier protein signature 251 269 IPR002067 GO:0055085
Rops10g01414 384 PRINTS Mitochondrial carrier protein signature 158 178 IPR002067 GO:0055085
Rops10g01414 384 PRINTS Mitochondrial carrier protein signature 118 132 IPR002067 GO:0055085
Rops10g01414 384 PANTHER SOLUTE CARRIER FAMILY 25 99 377 - -
Rops10g01414 384 ProSiteProfiles Solute carrier (Solcar) repeat profile. 100 183 IPR018108 -
Rops10g01414 384 FunFam Adenine nucleotide transporter BT1, chloroplastic/mitochondrial 98 381 - -
Rops10g01414 384 ProSiteProfiles Solute carrier (Solcar) repeat profile. 288 376 IPR018108 -
Rops10g01414 384 SUPERFAMILY Mitochondrial carrier 101 372 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01414 Rops-Chr10 27223676 27228333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01414 1 383 Organic Solute Cotransporters AT4G32400 68.622 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01414 K14684 - qsu:111999876 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01414 10 27223676 27228333 Rops10g01414 10 27223676 27228333 ECH