Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01399 ATGGCTCCGAGCACGATCCGGAAGGCGATTGGGACGGTGAAGGACCAAACAAGTATAGGGATAGCGAAGGTGGCTAGCAATATGGCACCGGACCTGGAGGTGGCGATTGTGAAGGCGACGAGCCACGACGATGATCCGGCGAGTGAGAAGTACATAAGGGAGATTCTGAACCTGATGTCGTACTCGCGTGGCTACGTTCACGCGTGTGTGTCGGCGGTGTCGAAGCGTTTGGGGAAGACGAGGGATTGGATTGTGGCTCTGAAAGCATTGATGCTGGTGCACAGGTTGATGAACGAAGGACCCCCTATGTTCCAGGAAGAGATCTTGTACGCCACACGCAGGGGAACCAGGCTCCTCAATATGTCTGATTTCAGGGACGAGGCTCACTCTAGCTCTTGGGATCACTCCGCTTTTGTTAGAACCTATGCTATGTATCTCGATCAACGCCTCGAGATGATGCTATTCGATAGAAAAGGTTCCAGTGTTCGCGGTGGTGGTAGTGGAGATGATAGGTTTGGTGGGAGAGATAGAGAGAATTTCAGGTCACCGCCTAATGAATATGAGTACGGAGGGGGAGAGTTTAGAGGGGAAGGTGGGTATGGGAATGGGATGAGGAGGACGAGATCGTTTGGTGACATGAGCGAAACGGCAGGGAGGGAAGACAAGAGGATTGTGAGTGTGACTCCGTTGAGGGATATGAAGCCTGAGAGGATTTTTGGTAAGATGGGTCATTTGCAGAGGCTTTTGGATCGTTTCTTGGCTTGTAGGCCTACTGGATTAGCGAAGAATAGCAGGATGGTTTTGATTGCGCTGTACCCTGTTGTTAAAGAGAGTTTTCAGTTGTATGCTGATATATGCGAGGTTTTGGCTGTGTTGCTTGATAAATTCTTTGATATGGAGTACCCGGATTGCGTCAAGGCCTTTGATGCTTATGCTAGTGCTGCTAAACAGATTGATGAGTTGGTTGCCTTTTACAATTGGTGTAAGGACACGGGTGTGGCGAGGTCCTCGGAGTACCCTGAAGTTCAGAGGATTACTAGTAAATTGCTTGAGACACTTGAGGAGTTCGTGAGGGATAGGGCCAAGAGACCGGAGAAGAAAGAGGAAGCTCCACCGGTGGAGAAACAAGAGGATGAGCCAGTGCCGGATATGAATGAGATCAAGGCGCTGCCTCCACCTGAGAATTATACCCCACCTCCTCAACTGGAGCCGGAGCCGGAGCCGGAGCCGGAGCCTAAGTCTAAGCCACAGCCACAATTTACAGAGGACTTGGTGAATCTGAGAGATGATGCAGTCACTGCAGATGACCAGGGTAATAAATTTGCTTTGGCACTCTTTGCTGGTGCGCCAGCTAATAATGCAAATGGATCATGGGAGGCTTTTCCATCAAATGGACAGCCAGAAGTGACTTCAGCTTGGCAAACCCCAGCTGCAGAACCCGGGAAAGCCGATTGGGAATTGGCATTGGTAGAGACAGCTAGTAATTTAGCGAGGCAGAAGGCAACTTTAGGTGGTGGATTTGATCCCTTATTGTTGAATGGCATGTATGATCAAGGAATGGTCAGGCAGCATGTCAGCACTTCCCAACTGAGTGGAGGGAGTGCAAGCAGTGTGGCACTGCCGGGATTGGGAAAAACTACAACTCCTGTTTTAGCTCTCCCAGCTCCAGATGGATCTGTGCAACCAGTTAATCAGGATCCATTTGCTGCATCAATGAGCATTCCACCCCCTTCATATGTGCAAATGGCCGATATGGAGAAGAAGCAGCAGTTACTTGTGCAGGAGCAGCAGGTGTGGCATCAGTATGCAAGGGATGGGATGCAAGGTCAATCTAGCTTGACCAAACTGAGTGGCACTGGATACTACGCTGGAGGTCCTGTGCCAATGATGCCTTATGGAATGCCCCCAGTCAATGGAATGGGACCTCCACCCGGGTATTACCACACTCCTTACTGA 1956 0.5031 MAPSTIRKAIGTVKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDPASEKYIREILNLMSYSRGYVHACVSAVSKRLGKTRDWIVALKALMLVHRLMNEGPPMFQEEILYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYAMYLDQRLEMMLFDRKGSSVRGGGSGDDRFGGRDRENFRSPPNEYEYGGGEFRGEGGYGNGMRRTRSFGDMSETAGREDKRIVSVTPLRDMKPERIFGKMGHLQRLLDRFLACRPTGLAKNSRMVLIALYPVVKESFQLYADICEVLAVLLDKFFDMEYPDCVKAFDAYASAAKQIDELVAFYNWCKDTGVARSSEYPEVQRITSKLLETLEEFVRDRAKRPEKKEEAPPVEKQEDEPVPDMNEIKALPPPENYTPPPQLEPEPEPEPEPKSKPQPQFTEDLVNLRDDAVTADDQGNKFALALFAGAPANNANGSWEAFPSNGQPEVTSAWQTPAAEPGKADWELALVETASNLARQKATLGGGFDPLLLNGMYDQGMVRQHVSTSQLSGGSASSVALPGLGKTTTPVLALPAPDGSVQPVNQDPFAASMSIPPPSYVQMADMEKKQQLLVQEQQVWHQYARDGMQGQSSLTKLSGTGYYAGGPVPMMPYGMPPVNGMGPPPGYYHTPY* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01399 651 FunFam Clathrin coat assembly protein 3 156 - -
Rops10g01399 651 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 594 IPR045192 GO:0048268|GO:0072583
Rops10g01399 651 MobiDBLite consensus disorder prediction 162 193 - -
Rops10g01399 651 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Rops10g01399 651 MobiDBLite consensus disorder prediction 359 419 - -
Rops10g01399 651 MobiDBLite consensus disorder prediction 169 183 - -
Rops10g01399 651 CDD ANTH_N_AP180_plant 32 151 - -
Rops10g01399 651 FunFam putative clathrin assembly protein At2g25430 224 369 - -
Rops10g01399 651 SUPERFAMILY GAT-like domain 229 359 - -
Rops10g01399 651 MobiDBLite consensus disorder prediction 359 384 - -
Rops10g01399 651 SMART enth_2 30 160 IPR013809 -
Rops10g01399 651 Gene3D ANTH domain 222 371 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Rops10g01399 651 Gene3D - 2 156 IPR008942 -
Rops10g01399 651 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Rops10g01399 651 Pfam ANTH domain 31 359 IPR011417 GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01399 Rops-Chr10 26993711 26996368 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01399 - - gmx:100787076 1029.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01399 10 26993711 26996368 Rops10g01399 10 26993711 26996368 ECH