Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01356 ATGGCGACCAGAAGAACTCCGACGCTAACTAAATCCGTTATCTCCGCCGTAACCGCCTCTAGGACCTCTCTATCTCGCTCCCGCTCACTCTTCTCAGCCGTTCATCGCGCTTCGGAGAGTACGATAAATTCCGTTTCTCGGTCTCAGGTTATCGACACGCTCGCAGCCACCAATGTCGCCTCCGCGAAGTTCCTCTCTCACTCTTTCACTCGCACCTTCCACGCTTCTACTCCCTCATACCGCTCTGCTGGAACCTCTCAGGTAACACAGACAGAGTTCACAGAGATGGCTTGGGAGGGCGTTCTTGGTGCTGTTGATGCTGCTCGAGTTAGTAAACAACAAATAGTGGAATCTGAGCATTTAATGAAGGCCCTCTTGGAGCAAAAGGATGGTTTGGCTCGAAGAATATTTACTAAGGCTGGATTGGATAACACGTCAGTTCTACAAGCCACAGATAACTTTATAGCTCAGCAACCTAAGGTTACAGGTGACACTGCTGGTCCTATAATGGGTTCGCATCTTAGCTCCCTCTTGGATAATTCTCGAAAGCACAAGAAAGAAATGGGTGATGAATATGTGTCTGTGGAGCACCTTTTGCTTGCATTTCATTCAGATAAGAGGTTTGGGCAACAGTTATTTAAGAATCTTCAGCTTAGCGAGAAGGCTTTGAAGGATGCTGTACAGGGTGTTCGTGGAAGTCAAAGAGTAACTGATCAAAATCCTGAGGGTAAATATGAGGCATTGGACAAGTATGGAAATGACCTGACTGAACTTGCTAGGCGTGGCAAGCTTGATCCTGTCATAGGTCGAGATGATGAAATTCGGCGCTGTATCCAGATATTGTCGAGGAGAACAAAAAACAATCCAGTTATTATTGGTGAACCCGGTGTGGGGAAAACTGCAATTGCTGAAGGATTAGCTCAACGTATAGTGCGTGGAGACGTTCCAGAACCATTAATGAACCGGAAGTTGATCTCCCTCGATATGGGTTCATTGCTTGCTGGTGCCAAGTTTCGTGGAGATTTTGAAGAAAGGTTGAAAGCTGTCCTGAAGGAAGTTACAGCATCAAACGGACAAATAATTTTGTTCATTGATGAAATTCATACTGTTGTAGGTGCAGGGGCTACCAGTGGTGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGAAGAGGTGAACTTCGATGTATAGGAGCAACTACATTGAATGAGTATAGAAAATACATTGAAAAGGATCCTGCACTCGAGCGTAGATTTCAACAAGTGTTTTGCAGTCAACCATCAGTTGAAGATACAATATCCATTCTTCGTGGATTGCGTGAGCGCTATGAGTTGCATCATGGAGTCAAAATATCAGATAGTGCACTTGTTTCTGCTGCAGTTCTTGCAGATCGATACATCACAGAGCGCTTCCTACCTGACAAAGCTATTGATCTTGTCGATGAAGCTGCTGCAAAGCTGAAGATGGAGATCACCTCTAAGCCTACAGAATTGGATGAGATAGACAGAGTGGTCTTGAAATTGGAGATGGAAAAACTGTCTCTGAAAAATGACACTGACAAGGCATCTAAAGAAAGATTAAGCAAGCTTGAAAACGATTTGAATTTACTTAAACAGAAGCAAAAAGAATTGACAGAACAATGGGACAGTGAAAAAGTTTTAATGACTCGGATAAGATCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCAGAGCGTGATTATGACCTGAACCGTGCTGCTGAGCTGAAGTATGGAACCTTGATGTCCCTTCAGCGCCAATTAGAAGAAGCTGAAAAGAATCTAGCTGACTTCCGAAAGTCTGGACAATCTTTACTTCGAGAAGAGGTCACTGACCTTGATATTACTGAGATTGTAAGCAAATGGACTGGTATACCACTGTCAAACCTCCAACAAACAGAGAGAGAAAAGTTAGTTTTGCTGGAAAAGGTTCTTCATAAGAGGGTGGTTGGTCAGGATATTGCTGTAAAATCTGTGGCTGATGCAATTCGCCGTTCAAGGGCTGGATTGTCTGACCCAAATCGGCCAATTGCAAGCTTCATGTTCATGGGTCCAACTGGTGTTGGAAAGACTGAGCTTGCCAAGGCTTTGGCTGGTTACTTGTTTAACACAGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAGAAACATGCTGTTTCACGTTTAGTTGGGGCCCCTCCTGGTTATGTTGGTTATGAAGAAGGTGGTCAGCTAACTGAAGTGGTCCGGAGAAGACCCTACTCTGTGGTACTATTTGATGAAATAGAGAAGGCACATCATGATGTCTTCAACATCTTGTTACAGTTGTTGGATGATGGAAGGATTACTGATTCTCAAGGAAGGACTGTTAGCTTCACAAATTCTGTTGTGATTATGACTTCAAACATTGGCTCCCATTACATACTTGAGACCCTTCGTAATACACAAGATGACAAACTTGCCGTTTATGATCAGATGAAAAGGCAAGTTGTTGAGTTGGCTAGGCAAACATTCCGCCCAGAGTTCATGAATCGCATTGACGAGTATATTGTTTTCCAGCCTCTGGATTCCCAACAGATCAGCAAAATAGTGGAGCTCCAGATGGAACGAGTGAAGGGCAGGCTTAAGCAGAAGAAAATTGATCTTCATTACACACAAGAAGCTGTTAAACTTCTTGGTGAATTGGGTTTTGATCCAAATTTTGGGGCCAGGCCAGTCAAGAGAGTAATACAACAATTGGTTGAAAATGAAATTGCTATGGGAGTTCTAAGGGGAGATTTTAAAGAAGAGGACTCAATCATAGTTGATGCTGATGTGACCTCATCAGGTCCTCCCCTAAATAGACTGGTCATTAAGAAGCTGGACAGCCATGTTGCTGACGCCATGGTTGTCAATGACTAA 2925 0.4356 MATRRTPTLTKSVISAVTASRTSLSRSRSLFSAVHRASESTINSVSRSQVIDTLAATNVASAKFLSHSFTRTFHASTPSYRSAGTSQVTQTEFTEMAWEGVLGAVDAARVSKQQIVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATDNFIAQQPKVTGDTAGPIMGSHLSSLLDNSRKHKKEMGDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSEKALKDAVQGVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCSQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRVVLKLEMEKLSLKNDTDKASKERLSKLENDLNLLKQKQKELTEQWDSEKVLMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLADFRKSGQSLLREEVTDLDITEIVSKWTGIPLSNLQQTEREKLVLLEKVLHKRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNSVVIMTSNIGSHYILETLRNTQDDKLAVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSQQISKIVELQMERVKGRLKQKKIDLHYTQEAVKLLGELGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDSIIVDADVTSSGPPLNRLVIKKLDSHVADAMVVND* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01356 974 FunFam ATP-dependent Clp protease subunit 641 861 - -
Rops10g01356 974 SUPERFAMILY Double Clp-N motif 92 243 IPR036628 -
Rops10g01356 974 Gene3D - 430 635 IPR027417 -
Rops10g01356 974 Gene3D - 236 429 IPR027417 -
Rops10g01356 974 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 799 813 IPR001270 GO:0005524
Rops10g01356 974 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 737 755 IPR001270 GO:0005524
Rops10g01356 974 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 766 784 IPR001270 GO:0005524
Rops10g01356 974 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 692 710 IPR001270 GO:0005524
Rops10g01356 974 FunFam Chaperone clpB 1, putative 236 429 - -
Rops10g01356 974 Gene3D - 640 861 IPR027417 -
Rops10g01356 974 Pfam Clp amino terminal domain, pathogenicity island component 183 232 IPR004176 -
Rops10g01356 974 Pfam Clp amino terminal domain, pathogenicity island component 104 155 IPR004176 -
Rops10g01356 974 Pfam AAA domain (Cdc48 subfamily) 687 856 IPR003959 GO:0005524|GO:0016887
Rops10g01356 974 Coils Coil 521 548 - -
Rops10g01356 974 FunFam ATP-dependent chaperone ClpB 863 951 - -
Rops10g01356 974 Pfam ATPase family associated with various cellular activities (AAA) 291 424 IPR003959 GO:0005524|GO:0016887
Rops10g01356 974 FunFam ATP-dependent chaperone ClpB 430 635 - -
Rops10g01356 974 ProSitePatterns Chaperonins clpA/B signature 2. 722 740 IPR028299 -
Rops10g01356 974 Gene3D - 89 235 IPR036628 -
Rops10g01356 974 SMART ClpB_D2_small_2 863 959 IPR019489 -
Rops10g01356 974 CDD AAA 268 425 - -
Rops10g01356 974 FunFam Chaperone protein ClpB3, chloroplastic 89 235 - -
Rops10g01356 974 NCBIfam ATP-dependent chaperone ClpB 93 946 IPR017730 GO:0005737|GO:0009408|GO:0042026
Rops10g01356 974 PANTHER ATP-DEPENDENT CLP PROTEASE 94 963 - -
Rops10g01356 974 ProSitePatterns Chaperonins clpA/B signature 1. 381 393 IPR018368 GO:0005524
Rops10g01356 974 SMART AAA_5 285 429 IPR003593 GO:0016887
Rops10g01356 974 SMART AAA_5 688 845 IPR003593 GO:0016887
Rops10g01356 974 Gene3D - 863 956 - -
Rops10g01356 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 943 IPR027417 -
Rops10g01356 974 ProSiteProfiles Clp repeat (R) domain profile. 88 233 IPR004176 -
Rops10g01356 974 Pfam C-terminal, D2-small domain, of ClpB protein 863 943 IPR019489 -
Rops10g01356 974 CDD RecA-like_ClpB_Hsp104-like 649 860 - -
Rops10g01356 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 636 IPR027417 -
Rops10g01356 974 Coils Coil 586 620 - -
Rops10g01356 974 Coils Coil 559 579 - -
Rops10g01356 974 Pfam AAA lid domain 429 531 IPR041546 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01356 Rops-Chr10 26297168 26313425 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01356 K03695 - gmx:100782242 1719.13