Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01349 ATGGAGGAAGATGAAATTCTTGGGTATGTAACAGCGTATTTGAAGAAGAAGGGTTTTACGCAAACGGAGAAGGTTTTTCAGGAAGAATTTCAACAGAACAAGAACAACAATGCCTCTTCTAATTCCCCTCTCGAACCCGACATTGCCAACCACCTCCTTGCTTTCTCTCAATTGGAAACTGGTCCTGCAAGGTTCCATGATGGATATAGCAGACTAAGATCATGGACTTACTCTTCACTAGATTTATATAGGCACGAGTTGCTTCGTGTACTTTATCCAGTGTTTATCCATTGCTTTATGGATCTTGTGGCAAAAGGCCATGTTCAGGAAGCTCGGAACTTCTTCAATACCTTCCGTGAAGACCATGAAATGCTGCACTTACGTGACCTTCAGAAGCTGGAAGGAGTTCTTTCTCCTACTCATCTGGAGGAAATGGAATTCGCTCATTCACTTAGGAAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACACAGTACACAATCTACCACTATACTTGGTATTATCAATGAGCATATTAATTTCCAAGTTACCCCCGGACAACCTAGCTCAATTTCTGAGGATCCAGAGGCCGTTACTCTTACTGGTAGCAGCCAGGAAGCAGCAAACCAGACAAATCAGAAAGAAATACATTGGGGGTTGCTTGAAGACTCTCTAGAAGAACGGCTGGAGAAGGCTGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGACGGGGAAGCAAAAGAGGTGGAGAATGATGAGAGTAAGAAAAGATCAATTGAAGTAGGAAAACAAGGTGCTTCAGTCAAAAAGGTAAAAAAGGACAAGGGTGGAGGTGCAACAGGGAAAGGTGCAAAACCTGAAGCTAACACTGTATCAGCAGCTCCTCGAGTTAAGCCAGAACTCTCCATGCCCATAATCCCAACTGAGGTAGAAAACTCCATCCTTGAAGATTTGAGGAACCGTGTTCAACTTAGTAGTGTTTCGCTGCCATCAGTTAGCTTTTACACATTTATCAATACACATAATGGTTTAAGCTGTTCATCAATATCCCATGACGGATCATTGGTTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAGCCTGCCAATTCTCTTTCACAGGGTGAGAATGATACCTCACAAAATGAACAAATGCTTGGGCAAAGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGACCTGTTTATGCAGCCTCTTTCAGTCCTTTTGGGGATTTTATTCTTTCATCCTCTGCAGACTCAACAATTCGATTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCATAATTACCCTGTTTGGGATGTTCAGTTTAGTCCTCTCGGGCATTATTTTGCCAGCTCTTCACATGACAGAACTGCTAGAATTTGGTCCATGGACAGGATACAGCCTTTAAGGATAATGGCAGGGCATTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATCGCAACCGGCTCCAGTGACAAAACAGTTCGACTATGGGATGTCCAGAGTGGGGAATGTGTCCGGGTGTTTGTTGGTCACAGGGGTATGATTTTGGCTTTGGCAATGTCTCCTGATGGTCGTTATATGGCATCTGGTGATGAAGATGGCACAATCATGATGTGGGACCTCTCTAGTGGCCGCTGTGTCACACCTTTGATCGGTCACACGTCAAGTGTCTGGACACTCACCTTCAGTTCTGAAGGCTCTATTCTAGCTTCTGGATCTGCTGATAGCACTGTAAAATTGTGGGATGTAAATACGAGTACTAAGGCTTCAAGGACCGAAGAAAATAGAAGTGGGAATACTAACAGACTCAGATCGCTGAAAACCCTGCCAACCAAATCTACTCCTGTTTCTTCTTTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGAGCTCTTGCAAAAAATGGCTAA 2016 0.4355 MEEDEILGYVTAYLKKKGFTQTEKVFQEEFQQNKNNNASSNSPLEPDIANHLLAFSQLETGPARFHDGYSRLRSWTYSSLDLYRHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMLHLRDLQKLEGVLSPTHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSSISEDPEAVTLTGSSQEAANQTNQKEIHWGLLEDSLEERLEKAGALLSDSEKGDGEAKEVENDESKKRSIEVGKQGASVKKVKKDKGGGATGKGAKPEANTVSAAPRVKPELSMPIIPTEVENSILEDLRNRVQLSSVSLPSVSFYTFINTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQPANSLSQGENDTSQNEQMLGQSGGKRQYTLFQGHSGPVYAASFSPFGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPLGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILALAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLIGHTSSVWTLTFSSEGSILASGSADSTVKLWDVNTSTKASRTEENRSGNTNRLRSLKTLPTKSTPVSSLRFSRRNLLFAAGALAKNG* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01349 671 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
Rops10g01349 671 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 3 666 - -
Rops10g01349 671 FunFam Transcription initiation factor TFIID subunit 5 494 664 - -
Rops10g01349 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 500 537 - -
Rops10g01349 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 625 IPR001680 GO:0005515
Rops10g01349 671 ProSitePatterns Trp-Asp (WD) repeats signature. 603 617 IPR019775 -
Rops10g01349 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 458 492 - -
Rops10g01349 671 MobiDBLite consensus disorder prediction 385 404 - -
Rops10g01349 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 579 - -
Rops10g01349 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 448 - -
Rops10g01349 671 SUPERFAMILY WD40 repeat-like 341 666 IPR036322 GO:0005515
Rops10g01349 671 PRINTS G protein beta WD-40 repeat signature 519 533 IPR020472 -
Rops10g01349 671 PRINTS G protein beta WD-40 repeat signature 435 449 IPR020472 -
Rops10g01349 671 PRINTS G protein beta WD-40 repeat signature 603 617 IPR020472 -
Rops10g01349 671 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Rops10g01349 671 Gene3D TFIID subunit TAF5, NTD2 domain 45 193 IPR037264 -
Rops10g01349 671 Pfam WD40 associated region in TFIID subunit, NTD2 domain 60 188 IPR007582 -
Rops10g01349 671 CDD TAF5_NTD2 62 194 IPR007582 -
Rops10g01349 671 ProSitePatterns Trp-Asp (WD) repeats signature. 561 575 IPR019775 -
Rops10g01349 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 500 541 IPR001680 GO:0005515
Rops10g01349 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 499 IPR001680 GO:0005515
Rops10g01349 671 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 584 619 - -
Rops10g01349 671 MobiDBLite consensus disorder prediction 243 305 - -
Rops10g01349 671 SUPERFAMILY Taf5 N-terminal domain-like 50 193 IPR037264 -
Rops10g01349 671 Pfam WD domain, G-beta repeat 413 448 IPR001680 GO:0005515
Rops10g01349 671 Pfam WD domain, G-beta repeat 348 378 IPR001680 GO:0005515
Rops10g01349 671 Pfam WD domain, G-beta repeat 455 490 IPR001680 GO:0005515
Rops10g01349 671 Pfam WD domain, G-beta repeat 578 616 IPR001680 GO:0005515
Rops10g01349 671 Pfam WD domain, G-beta repeat 536 574 IPR001680 GO:0005515
Rops10g01349 671 Pfam WD domain, G-beta repeat 495 532 IPR001680 GO:0005515
Rops10g01349 671 Gene3D - 201 495 IPR015943 GO:0005515
Rops10g01349 671 Gene3D - 496 669 IPR015943 GO:0005515
Rops10g01349 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 583 IPR001680 GO:0005515
Rops10g01349 671 CDD WD40 347 667 - -
Rops10g01349 671 ProSitePatterns Trp-Asp (WD) repeats signature. 365 379 IPR019775 -
Rops10g01349 671 SMART WD40_4 451 490 IPR001680 GO:0005515
Rops10g01349 671 SMART WD40_4 409 448 IPR001680 GO:0005515
Rops10g01349 671 SMART WD40_4 493 532 IPR001680 GO:0005515
Rops10g01349 671 SMART WD40_4 577 616 IPR001680 GO:0005515
Rops10g01349 671 SMART WD40_4 535 574 IPR001680 GO:0005515
Rops10g01349 671 SMART WD40_4 339 378 IPR001680 GO:0005515
Rops10g01349 671 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 448 IPR001680 GO:0005515
Rops10g01349 671 MobiDBLite consensus disorder prediction 243 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01349 Rops-Chr10 26202135 26212427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01349 542 670 Miscellaneous Gene Families AT5G08390 24.615 2.39e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01349 K03130 - gmx:100805953 1166.76