Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01346 ATGGGTCACATTGGTTCCAGTAAGGAAGGGAAGAAGGTGGACATGGAGATGAAGGACGTAGAAGACGATGACGTGGACGACCTCGACCTTGATGTTCCTACGAATGCCGAAATCCTCGAAGAATTGGGAGAGGCTATGGTGATAGATTTCTGCAAGAAGGCTTCGACGTTGTTCTTCGATGAGTATGGTCTCATCAGTCACCAAATCAATTCCTACAATCAATTTATCAGCTCTGGTCTTCAAAGCACGTTTGATTCTTTCGGTGACCTAATTGTTACGCCGGGTTTCGATCCCTCCAAGAAGGGAGAACAAGAACATTACCGTTATGCTTCCGTTAGGTTTGGAAAGGTAACCATTGATCGTCCCAAGTTCTGGGGTGGTGAAGGCAATTCTCAAGAGTTTAAGATGCTTCCAAGACATGCACGACTTCAGAGGATGACTTATTCTTCCAAAACGAAAGTCAATGTTCAAATTCAGGTGTATGTTCCTAAGAAGGTTAGAAGTGATAAATTTAAGACTGGGAAAGAAGAATATCTTGATAAAGAGATTCTGAAGGAAGACAACAGAGAAATACTCATTGGGAGACTGCCTGTGATGGTCAAGTCTGATCTATGCTGGATGAAGGATGCTGAAAAGGGTGATTGTGAATTTGATCATGGAGGATACTTCCTCATCAAGGGTGCTGAGAAGGCTTTTATTGCACAGGAGCAACTCTATCTAAAGAAGCTCTGGGTTTTAAATAGTCCAGACAAAGAGATTATAGATCTTATTGATTATGGAAACCGTGATGCCAGAATTCACAACATTCTCGTTGCATCCATTTGTGATGCTGATGAGAAATGTGCAGCCTTTCGTAAAGGGAAGAATGCTCTCCATTACCTAGAGGAACACATAAAAGGTGTCCAATTTCCACCTTCAGAGTCTATTGAGGAGTGCCTTAATATGTATCTCTTTCCCGGCATTAGAGGCTTGAATAGAAAGGTGCGCTTCCTTGCATATATGGTGAAGGGTCTCTTACTGGCTTATACTGGCCGAAGAAAATGTGATAACAGAGATGATTTTCGAAATAAGAGGCTTGACTTGGCTGGTGAGCTGCTCGAGCGTGAGCTAAAAGTGCACATTGCACATGCTCGGAAGCGAATGGCAAAGGCTTTGCAGAGAGACCTTTATGGAGATCGTGATGTACGCCCAATTGAGCACTATCTTGATGCTTCCATAATTACAAATGGTCTCCAAAGAGCATTTTCTACTGGAGCATGGTCTCATCCTTATAAAAGGTTAGAAAGGATTTCTGGTGTGGTTGCAAATCTTGGCCGAACTAATCCATTGCAGACCATGGCTGAATTAAGAAGAACAAGGCAACAAGTTCAGTACACAGGAAAGGTCGGGGATGCTAGATACCCGCATCCTTCTCATTGGGGTAAGGTCTGTTTCCTCTCTACCCCGGATGGTGAAAATTGTGGATTAGTAAAAAATTTGGCTGTCACAGGACTAGTAAGCACCAAAATATCTGAATCTATACTGCCTCAGTTGTTTGATTGTGGAATGGAGGAATTTGTTGATGATACTACCACTCATCTGGGCAACAAAGACAAAGTCTTCCTAAATGGGGATTGGGTTGGAGTGTGTCCGGATTCCATTTCATTTGTGGCAGAGCTGCGAAGTAAAAGACGTAGAAATGAATTGCCTCATCAGGTGGAAATCAAAAGAGACCCAAGTCAACAAGAAGTGCGCATATTCTCTGATGCTGGAAGGATTCTACGTCCACTTTTGGTAGTTGGTAATCTACTCAAGATTAAAGGATCTAAATCAGCAAATTACTCTTTTCAGTCCCTATTGGATAAGGGTGTGATTGAGCTTGTAGGACCTGAAGAAGAGGAAGACTGCTGTACTGCTTGGGGTGTTCAGTATTTATTTGCAAAAGAGGGAAAATCTTCTGTAAAGTACACACACTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGCTGTTCGCTTGTACCATTTGCTAATCATGACCATGCAAGGAGGGTACTCTACCAGTCCCAGAAAGCACTCTTCCCAGGCCATTGGCTTTTCTACTACAAACCCAGATATTAG 2100 0.4257 MGHIGSSKEGKKVDMEMKDVEDDDVDDLDLDVPTNAEILEELGEAMVIDFCKKASTLFFDEYGLISHQINSYNQFISSGLQSTFDSFGDLIVTPGFDPSKKGEQEHYRYASVRFGKVTIDRPKFWGGEGNSQEFKMLPRHARLQRMTYSSKTKVNVQIQVYVPKKVRSDKFKTGKEEYLDKEILKEDNREILIGRLPVMVKSDLCWMKDAEKGDCEFDHGGYFLIKGAEKAFIAQEQLYLKKLWVLNSPDKEIIDLIDYGNRDARIHNILVASICDADEKCAAFRKGKNALHYLEEHIKGVQFPPSESIEECLNMYLFPGIRGLNRKVRFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLDLAGELLERELKVHIAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRLERISGVVANLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTKISESILPQLFDCGMEEFVDDTTTHLGNKDKVFLNGDWVGVCPDSISFVAELRSKRRRNELPHQVEIKRDPSQQEVRIFSDAGRILRPLLVVGNLLKIKGSKSANYSFQSLLDKGVIELVGPEEEEDCCTAWGVQYLFAKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKALFPGHWLFYYKPRY* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01346 699 Gene3D - 57 686 - -
Rops10g01346 699 Pfam RNA polymerase Rpb2, domain 4 533 593 IPR007646 GO:0003677|GO:0003899|GO:0006351
Rops10g01346 699 FunFam DNA-directed RNA polymerase subunit beta 56 240 - -
Rops10g01346 699 Pfam RNA polymerase beta subunit 63 397 IPR007644 GO:0003677|GO:0003899|GO:0006351
Rops10g01346 699 Pfam RNA polymerase Rpb2, domain 5 609 655 IPR007647 GO:0006351
Rops10g01346 699 FunFam DNA-directed RNA polymerase subunit beta 348 536 - -
Rops10g01346 699 Pfam RNA polymerase Rpb2, domain 3 437 496 IPR007645 GO:0003677|GO:0003899|GO:0006351
Rops10g01346 699 Pfam RNA polymerase Rpb2, domain 2 249 360 IPR007642 GO:0003677|GO:0003899|GO:0006351
Rops10g01346 699 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 47 684 - -
Rops10g01346 699 Gene3D RNA polymerase Rpb2, domain 2 245 348 IPR037034 GO:0003677|GO:0003899|GO:0006351
Rops10g01346 699 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 248 684 IPR015712 GO:0003899|GO:0006351|GO:0032549
Rops10g01346 699 Gene3D - 502 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01346 Rops-Chr10 26161365 26166676 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01346 K16252 - gmx:100779425 1129.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01346 10 26161365 26166676 Rops10g01346 10 26161365 26166676 ECH