Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01325 ATGAGGACAGTGGTTTCGCGCTTGATCCATTCCCTGCCTTCAATTACAAGGCTCAATGCAAGGCCCATGTCAATCAATGGGAGAAATCTCTCCACAGACTCCAATAAGGTTGATGAACCCCTCAAAGTTGAAGAAGCAGAGACCGTAAATGTGCCCCCACCCCCAACAGAGAAGTTTCTTGTGTTGGGAGGCAATGGATTTGTTGGATCACACATTTGTAGAGAAGCCTTAGATCGTGGTTTGTCTGTTGCGAGTCTTAGCAGGTCTGGTAGGTCGTCCCTGCATGATTCCTGGGCTAGCAATGTCACCTGGTACAAAGGGAATCTCCTTTCAGCCGATTCATTAAAAGAAGCTCTGAATGGTGTCACTGCTGTTATCTCATGTGTCGGTGGTTTTGGCTCCAACTCCTACATGTATAAAATTAATGGGACTGCTAACATCAACGCAATTAGAGCAGCTTCAGATCAAGGTGTTAAAAGATTTGTCTATATATCTGCTGCTGACTTTGGTATAGTAAATTACTTACTGAAAGGATATTATGAAGGAAAGAGAGCTGCTGAAACAGAGCTTCTGACCAGATTTCCTTATGGAGGAGTAATTCTGAGGCCAGGATTTATTTATGGGACTCGAGGTGTTGGGAGTATGAAGATACCCCTTGGTGTAATTGGATCTCCCCTGGAGATGGTTCTCCAACATGCTAAACCATTGAATCAGATCCCACTTGTGGGGCCTCTATTGACACCTCCTGTCAATGTTACTGCGGTTGCAAAAGTTGCTGTTAGAGCTGCTACTGATCCTGTTTTCCCTCCGGGGATCATAGATGTTTATGGAATACAACGTTACAGTCAGCATAGATCAAAAATAATATCTGAAAGTGCGTCTGCACAAGTGGGAGATATAGACTTGCTCTACAAACTGATTCAGATGGAACCATATCTCTTGGAGCACACTGATTTGATACCCTTTGTTGATACTCCTTTGCATGTTGCTGCTGCTGCTGGGCATGCTAGTTTTGCCACTGAGATTATGAGGCTGAAACCTTCTTTTGCATGGAAGCTGAATCAGTTTGGGCTTAGCCCCATTCACCTAGCTTTACAAAATAAGCATTATAGAATGGTGTGTCGTTTTGTAGACATCAATAAAGACCTGGTCCGAGTCAAAGGGAAGGAGGGCCTTACTCCTTTGCATATTGCAACTCAAACCGGGAAAATTGATCTCCTACCTAAATTTTTATCAGCTTGTCCAGGTTCTATTGAAGATGTCACTGTTAGAAGTGAGACTGCTCTACATATTGCTCTGAAATATGAACAGTTTCAAGCTTTTGAGGTCTTGCTTGGTTGGCTTCAGAGGAATTGCCATAGAAAAGCTCAGCACCAGGAAAAACGGATTCTCAACTGGGAGGATGAAGCAGGCAACACCATCCTCCACATTTCAGTTCTCAAATGCGCAGTTAGATTGTTGATAGATAGCAAAATAGACTTAAATGCCAAGAATTTAGAGGACTTAACAGCTTTGGACATAGTGGAGAATCAGACCCCTCAGGCTTACAGTGTAGAGATCAGGGATATGTTAGTTAGAGCTGGAGCTTTACGTGGTTTTTCACTTGATGCTCTACCACTCCATGAAGAAGAGCTAAGGTCAAAAATCATGTTTAATGAGAGAGTAGCAATTTGTGTTACTCGCCTCAGAAGGAGAATATCAAATGACACACGTAATGCTTTGTTGGTAGTTGCTATTCTTTTTGCAACAAGCACATATGAAGCAGCACTCAACCCCCCGGGAGGAGTTTATCAAGCTGAGGGTAAGAGGACTAGTGCATCTCTCAAGCCTACTAATGATGATGCAGCGCTAGAAAATGCTGGGAAAGTGGTGATGAAAATTGAAATTTTCTTTTGGTTCTGGTTATTCAATACCTGCTCCTTTTATCTGTCAACATTGATGATATGTTTGCTAATGCCTAGAGGGCGCATCAGTGTCATAGTGACTTATCCACTTTCTCTCTTTTCTGGTTGCTTTATGTTATCCATGCTAGTGTCATCACCCTGCCTTAAGTTAACCATTGCCTCTGTGGTTCTGCCAGGCATACTTATTGTACTCTATTGTTGGGGAACTTCTATGTATATTAGATTAGCCAAAAAGCTTCGAAAGTATGGTCGTGAAAAGGAAGACATGTCCATGTTTTCAGGGGGAAACAGATGGTAA 2202 0.426 MRTVVSRLIHSLPSITRLNARPMSINGRNLSTDSNKVDEPLKVEEAETVNVPPPPTEKFLVLGGNGFVGSHICREALDRGLSVASLSRSGRSSLHDSWASNVTWYKGNLLSADSLKEALNGVTAVISCVGGFGSNSYMYKINGTANINAIRAASDQGVKRFVYISAADFGIVNYLLKGYYEGKRAAETELLTRFPYGGVILRPGFIYGTRGVGSMKIPLGVIGSPLEMVLQHAKPLNQIPLVGPLLTPPVNVTAVAKVAVRAATDPVFPPGIIDVYGIQRYSQHRSKIISESASAQVGDIDLLYKLIQMEPYLLEHTDLIPFVDTPLHVAAAAGHASFATEIMRLKPSFAWKLNQFGLSPIHLALQNKHYRMVCRFVDINKDLVRVKGKEGLTPLHIATQTGKIDLLPKFLSACPGSIEDVTVRSETALHIALKYEQFQAFEVLLGWLQRNCHRKAQHQEKRILNWEDEAGNTILHISVLKCAVRLLIDSKIDLNAKNLEDLTALDIVENQTPQAYSVEIRDMLVRAGALRGFSLDALPLHEEELRSKIMFNERVAICVTRLRRRISNDTRNALLVVAILFATSTYEAALNPPGGVYQAEGKRTSASLKPTNDDAALENAGKVVMKIEIFFWFWLFNTCSFYLSTLMICLLMPRGRISVIVTYPLSLFSGCFMLSMLVSSPCLKLTIASVVLPGILIVLYCWGTSMYIRLAKKLRKYGREKEDMSMFSGGNRW* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01325 733 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 58 277 IPR036291 -
Rops10g01325 733 Gene3D - 288 520 IPR036770 -
Rops10g01325 733 ProSiteProfiles Ankyrin repeat region circular profile. 390 412 - -
Rops10g01325 733 ProSiteProfiles Ankyrin repeat profile. 390 411 IPR002110 GO:0005515
Rops10g01325 733 SMART ANK_2a 470 496 IPR002110 GO:0005515
Rops10g01325 733 SMART ANK_2a 322 351 IPR002110 GO:0005515
Rops10g01325 733 SMART ANK_2a 424 454 IPR002110 GO:0005515
Rops10g01325 733 SMART ANK_2a 390 420 IPR002110 GO:0005515
Rops10g01325 733 SMART ANK_2a 356 385 IPR002110 GO:0005515
Rops10g01325 733 Pfam NAD(P)H-binding 63 206 IPR016040 -
Rops10g01325 733 Pfam Domain of unknown function 568 657 IPR026961 -
Rops10g01325 733 FunFam Uncharacterized protein, chloroplastic 52 279 - -
Rops10g01325 733 Gene3D - 53 280 - -
Rops10g01325 733 PANTHER HOMEOBOX PROTEIN WARIAI 297 684 - -
Rops10g01325 733 SUPERFAMILY Ankyrin repeat 295 511 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01325 Rops-Chr10 25928212 25937454 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01325 290 707 Miscellaneous Gene Families AT5G15500 39.675 5.22e-88 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01325 - - gmx:100790227 642.884