Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01310 ATGCTTGTCTCTGGAGTATCATGGGATTTGAAATGGCTTCTGCAATTTATATTCTCGGCGTTTGTGGTGGCGATTGGGTTCCATACGTTGGTGAAGAACACTGCTTCCAAGTACTTTGAGGTCGATGCCAATTTCCAAGGGGAACGTCACGCCATGCCAGGTCTTCTCATGGATGATCCTCTCTGCGCCGTTTGTCTCAACCACGCCAACAAGAAATGTTCACGTTGCAAATCCGTGAGATACTGCTCAGAAGCATGCCAACAGATGCATTGGAAATCTGAACATAAGATGAAATGCAAGGAGTTTCGGAGCACAAGTGCAATGAATTTGGCTCCAACTGGACCAACTATTAGTGGGTTTAAAGCTTCTGCGGCTGTGAATAGAAGCACATCTTCAATTGCCCTGATCCCTGATCATGGTCCCGGAACTTCCAGGCCTATCAAGCAGCCTAAAAATGCTCTTTTTCCTTATGATGAATTTATTAAATTTTTTAACTGGGACAAGCCAGGATTTCCTCCTTGTGGACTCTTGAATTGTGGAAACAGCTGCTTTGCAAATGTGGTTCTCCAATGTCTTTCATTCACAAGGCCACTTATTGCCTACTTGTTGGAGAAGGGTCACAGAAGAGAATGCAGCCATAATGATTGGTGCTTTCTTTGCGAATTTGAAATCCATGTTGAAAAGGCAAGGCCAACTTCACAGGCATTTTCTCCTATGAATATCCTCTCTCGTTTGCCTAATATTGGTGGTACATTGGATTGTGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTGCCATTGATACTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTCCCTCCTAACCTTCAAGAAACAACCCTTATTCAACATATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGCACAGAATGTGGGAAGAATTCAAATCAGTATGAAAATATGATGGACTTGACAGTTGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAGTTTACTGTCAAGGAGTGGCTTCATGGGGAAAATATGTATAAATGTGATGGGTGCAAGGCTTATGTCAAGGCATGGAAGCGTCTCACAGTGAAACGTGCTCCAAATATTCTTACAATTGCCTTAAAAAGATTTCAGAGTGGGAGGTTTGGGAAACTTAACAAAAGAGTAACTTTCCCTGAGACTTTAGATCTTAGCCCTTACATGAGTGAAGTCGGAGATGGATCTGATATCTATAAGCTATATGCTGTTGTAGTACATATTGATATGCTGAATGCTTCATATTTTGGTCATTACATCTGCTACATCAAGGATTTCCGAGGAAAGTGGTATAGAATTGATGATTGGAAGGTTACGAGTGTGGAATTGGAGGAGGTTCTTTCTCAGGGTGCATACATGCTGTTGTATAGCAGGGTTAGTGCCCGGTCATCAGGACTTCAAAGTATTGAATCTTCAGATACAGCAGACGTGCAAAGAGTCAAAGTAGAAGTACTGCCTGGCCCAACTGAACAAGCTGAATGCTTTTCGGAGATGGAGACTGTGACTAACAGTAGAGGATGTGAGGCATGTCCATTTGATATTAGTCCAGAGTTGAAGGTTTCTGGCCGTGAATCTATGGCTTTGACTGGAATGAACTCTGGTGCAAAAAGTGAGCATTCTAAGGATATGGACGTTATTAATGTTGCAAATGGAACTTCCTGTAATGCTGTTGAGTCATCTTATACACGTAGTTCTCAAGCCATCAAAGATTTGGGAGATATAGATATGAGCAGATCAAATTCATGCTCATCTGTCTTAGAAGAGATTTCGGTCCGTGCAGAAGAGCAAGATGATAATGATATGGCTGAGTCTGGTCCTTCTCCAGTTTTGCCAAATGGCTTCTCTTGCTTTGATAAGAATTCTTCTGTTTCAATGGATTATCAAAACACTAGGGAAGATTCAGAACATGTAGATGTGATCAAATGCAATACGATAGCTGCAAAAGGCAATGCAAATTATAGCAATGGGTATGCCACGAACATACATGATATCCCAATTGAAGATGGGGCTGCTGTATTTTCTGGAGTTAGTTCTTTTTCCACTGAAACATCCTCAGCTGAGATGCATCAATTGAAACGGAGATTGCCATTCTACAGTTCTGAAGCTGACAAAGGAAATGGAGTTAAGAAAGTGGAAATATCAAGGAACAAGTTACTAATTTAG 2226 0.4155 MLVSGVSWDLKWLLQFIFSAFVVAIGFHTLVKNTASKYFEVDANFQGERHAMPGLLMDDPLCAVCLNHANKKCSRCKSVRYCSEACQQMHWKSEHKMKCKEFRSTSAMNLAPTGPTISGFKASAAVNRSTSSIALIPDHGPGTSRPIKQPKNALFPYDEFIKFFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKGHRRECSHNDWCFLCEFEIHVEKARPTSQAFSPMNILSRLPNIGGTLDCGRQEDAHEFMRFAIDTMQSVCLDEFGGEKAVPPNLQETTLIQHIFGGHLQSEVICTECGKNSNQYENMMDLTVEIHGDAASLEECLDQFTVKEWLHGENMYKCDGCKAYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSEVGDGSDIYKLYAVVVHIDMLNASYFGHYICYIKDFRGKWYRIDDWKVTSVELEEVLSQGAYMLLYSRVSARSSGLQSIESSDTADVQRVKVEVLPGPTEQAECFSEMETVTNSRGCEACPFDISPELKVSGRESMALTGMNSGAKSEHSKDMDVINVANGTSCNAVESSYTRSSQAIKDLGDIDMSRSNSCSSVLEEISVRAEEQDDNDMAESGPSPVLPNGFSCFDKNSSVSMDYQNTREDSEHVDVIKCNTIAAKGNANYSNGYATNIHDIPIEDGAAVFSGVSSFSTETSSAEMHQLKRRLPFYSSEADKGNGVKKVEISRNKLLI* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01310 741 Gene3D - 56 104 - -
Rops10g01310 741 ProSiteProfiles Zinc finger MYND-type profile. 62 99 IPR002893 -
Rops10g01310 741 CDD Peptidase_C19E 173 478 - -
Rops10g01310 741 ProSitePatterns Zinc finger MYND-type signature. 62 99 IPR002893 -
Rops10g01310 741 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 86 481 - -
Rops10g01310 741 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 174 480 IPR028889 -
Rops10g01310 741 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 175 190 IPR018200 GO:0004843|GO:0006511
Rops10g01310 741 FunFam Ubiquitin carboxyl-terminal hydrolase 15 168 488 - -
Rops10g01310 741 SUPERFAMILY HIT/MYND zinc finger-like 59 104 - -
Rops10g01310 741 Gene3D Cysteine proteinases 170 490 - -
Rops10g01310 741 FunFam Ubiquitin carboxyl-terminal hydrolase 15 55 103 - -
Rops10g01310 741 Pfam Ubiquitin carboxyl-terminal hydrolase 174 477 IPR001394 GO:0004843|GO:0016579
Rops10g01310 741 Pfam MYND finger 62 99 IPR002893 -
Rops10g01310 741 SUPERFAMILY Cysteine proteinases 170 489 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01310 Rops-Chr10 25736590 25742686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01310 5 506 Miscellaneous Gene Families AT4G31670 62.549 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01310 K11855 - gmx:100810577 1140.95