Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01307 ATGGCAAATGAACGTGATCTCTTCTCAGCTGAGATTGTGAACCGTGGGATTGAAGCATCTGGACCCAACGCCGGTTCATTGACCTTCTCAGTAAGGGTGAGGAGGCGTTTGCCAGATTTTCTTCAATCTGTCAACCTTAAGTATGTGAAGTTAGGTTACCATTATCTCATAAACCATGGCATTTACTTGTTCACCATACCGGTTCTTCTGGTGGTGTTCAGTGCTGAGGTTGGTAGCCTTCGCAAAGAGGATCTTTGGAAGAAGCTTTGGCACGATGCAAGTTATGACCTTGCCTCCGTTCTTGCTTCTTTTGCTGTCTTTGTTTTCACCTTCTCTGTTTACTTCATGTCAAAGCCACGTCCCATTTACCTCATTGATTTTGCATGCTACCGACCCGAGGATGAACTCAAGGTGTCAAGGGATGAGTTCATTGAGGTAGCAAGCAAATCAGGCAAGTTTGATGAAGGAAGCCTGGAGTTCCAGAAAAGGATCCTAAAGTCGTCAGGGATAGGTGATGAGACTTACATCCCAAAGGCGGTGATAGCATCGAGTGGAAACACAGCAACAATGAAAGAAGGTCGTGCTGAGGCATCAATGGTCATGTTTGGTGCTCTTGATGAACTCTTTGAGAAAACCAAGGTTCGTCCAAAGGACGTGGGTGTTCTTGTAGTGAACTGCAGCATCTTCAACCCAACACCATCATTGTCAGCAATGATAATAAACCATTACAAGATGAGGGGAAACATATTGAGTTACAACCTTGGTGGGATGGGTTGTAGTGCTGGGATTATAGGTGTGGATTTGGCAAGGGACATACTTCAAGCTAATCCTAATAACTATGCAGTGGTGGTGAGCACAGAGATGGTGGGGTATAACTGGTACCAGGGAAAAGAAAGGTCTATGCTTCTTCCAAACTGTTTCTTTCGCATGGGTTGCTCTGCTGTTCTACTCTCCAACCGTCGTCGTGATTATAACCGTGCTAAATACCGTCTTGAGCATATTGTTCGCACACACAAAGGTGCTGATGACCGTAGCTTCAGGAGTGTGTACCAAGAGGAAGATGATAAAAAATTCAAGGGACTAAAGATTAGCAAAGACTTGATTGAAATTGGCGGTGAGGCTCTGAAAACCAACATCACTACACTGGGACCCCTGGTGCTACCCTTTTCAGAGCAACTCCTGTTCTTTGCCACTTTGGTTTGGAGGCACTTATTTGGTGGTAAATCAGTTGGGAATTCACCATCAATGAAAAAGCCATACATTCCTGACTACAAACTAGCTTTTGAGCATTTTTGTGTGCATGCTGCAAGCAAGCCCATTCTTGATGAGCTGCAAAGGAACCTTGAACTGAGTGACAAGAACATAGAGGCATCAAGGATGACATTACACCGTTTTGGCAACACATCAAGCAGCAGCATTTGGTATGAGCTTGCTTACATGGAAGCAAAGGAGGGAGTGAAAAGTGGAGACCGTGTTTGGCAACTTGCTTTTGGCTCTGGCTTCAAGTGTAACAGTGTTGTTTGGCGTTCCATGCGTCGAATCAGCAAGCCTTCTAGGAACCCTTGGCTTGACTGCATCAACAGATACCCTGTGTCACTCACTTAA 1605 0.4505 MANERDLFSAEIVNRGIEASGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHGIYLFTIPVLLVVFSAEVGSLRKEDLWKKLWHDASYDLASVLASFAVFVFTFSVYFMSKPRPIYLIDFACYRPEDELKVSRDEFIEVASKSGKFDEGSLEFQKRILKSSGIGDETYIPKAVIASSGNTATMKEGRAEASMVMFGALDELFEKTKVRPKDVGVLVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIIGVDLARDILQANPNNYAVVVSTEMVGYNWYQGKERSMLLPNCFFRMGCSAVLLSNRRRDYNRAKYRLEHIVRTHKGADDRSFRSVYQEEDDKKFKGLKISKDLIEIGGEALKTNITTLGPLVLPFSEQLLFFATLVWRHLFGGKSVGNSPSMKKPYIPDYKLAFEHFCVHAASKPILDELQRNLELSDKNIEASRMTLHRFGNTSSSSIWYELAYMEAKEGVKSGDRVWQLAFGSGFKCNSVVWRSMRRISKPSRNPWLDCINRYPVSLT* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01307 534 Coils Coil 441 461 - -
Rops10g01307 534 CDD CHS_like 98 508 - -
Rops10g01307 534 SUPERFAMILY Thiolase-like 308 512 IPR016039 GO:0016746
Rops10g01307 534 FunFam 3-ketoacyl-CoA synthase 132 510 - -
Rops10g01307 534 Gene3D - 122 511 IPR016039 GO:0016746
Rops10g01307 534 PIRSF Very_long_ch_3-ktacl-CoA_syn 39 534 IPR012392 GO:0006633|GO:0016020|GO:0016747
Rops10g01307 534 SUPERFAMILY Thiolase-like 108 325 IPR016039 GO:0016746
Rops10g01307 534 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 429 509 IPR013747 -
Rops10g01307 534 PANTHER 3-KETOACYL-COA SYNTHASE 100 531 IPR012392 GO:0006633|GO:0016020|GO:0016747
Rops10g01307 534 Pfam FAE1/Type III polyketide synthase-like protein 114 403 IPR013601 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01307 Rops-Chr10 25678196 25681939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01307 2 533 Miscellaneous Gene Families AT2G26250 75.318 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01307 K15397 - gmx:100818799 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01307 10 25678196 25681939 Rops10g01307 10 25678196 25681939 ECH