Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01302 ATGATGAGTGAGCTCGACGACAGTGACGAATTCGAGATCCTTCTTACCCAGACGACAAATAATCACTTTCCGTTCAAGAAAGCTAAACACAAAACGACCGCGTTTTGTGGAATTAGCAAGGAGAACGCTCCCCCTAATGTGTCCTCTCCTATTTACAGCGACGGTTACGACATTGAAAACTGCAGCTTGGATTTCATTCCTTCCACCATAGATTCTGTTGGAAATGCTTCAACCGTTTCTTCTTCTGCGTCGGATCTGAAAACCAAAAAAAGCACTTATTTCAGCAACTCGATAGAGTCTAAGTTGGTGGAATCGAGAAGAACACACGCACTTGACGCTGATTCGGAGTTGAATTCGTGCTATGAGTTAGACGGAGTCTTTCGATGTCCCCTCTGTGAGGTTGATATTTCCGATTTGAATGAGGAACAGCGACATCTTCACACCAATCATTGTCTTGACAAAGGAGAAGATGTTGTCGCCCTTCCTGATGGTGATATTGGGGTTCAATTTGTGCCGAAAGTGTCTCGTGTGGTTGATTGGTTACGTGATCTAGGTTTGGGAAAATATGAAGATGTTTTCGTTAGGGAAGAAGTTGATTGGGACACCTTGCAATGGCTCACGGAAGAGGATCTGTTAAGCATGGGTATCACTGCACTTGGCCCCAGAAAAAAGATTGTGAATGCCCTGTCTGAACTTAGAAAAGGAACTGCCCCTTTAAACGAGAAACATGACGATGTTCTGGCAGAGCCTAGAGGGATTAGAAACCAGAAAGTGAAAATGCAACATAACAAATCTGAAAGAAAAGTTGAGGGCACTACTAAACCAGCAGCAAATAAATTAATTACTGAATATTTTCCTGGCTTTGCTATCAATGGGAAGAAAGTTTCTGCCGCTCCTGGAGAACAACAACAACAACATGAAATGGAAAACAGTGGCTCGGTTTCTGGTCGTAAGCTCAAAGCTAAAAAGATGTCTACAAATAGGAAGCTTCGTGATGTTCCCAAATGGTGTGTCATACCAGGAACGCCTTTCCGGGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCCCACTGGTTTCTCACACACTTCCACTTGGACCATTATCAAGGTCTCACCAAGTCTTTCAATCATGGAAAGATCTATTGCTCCTCCGTTACAGCTAGACTTGTAAATTTGAACATTGGGATTCCGTATGATAAATTACATGTTTTGCCTCTGAACCAAACGGTTGAAATAGCTGGTATTGATGTGACTTGCTTGGATGCCAACCATTGTCCAGGTTCCATAATCATACTCTTTCAACCTCCGAATGGTAAGGTGGTGCTCCACACGGGTGATTTTCGTTTCAATGAAGAAATAGCAATCAATTCTTTCCTCCAGATGTGTCCTGTTCATACTCTAATTCTTGATACAACATACTGCAACCCACAGTATGACTTTCCAAAACAAGAGGCTGTAATACAATTTGTTATTGACGCCATTCAAGCTGAAGCTTTTAATCCCCGGACTATCTTTCTGATTGGCAGCTATACAATTGGAAAAGAAAGGCTATTCCTGGAGGTTGCTCGTTCGCTTCGTAAAAAGGTTTACGTGACTGCTGCAAAGTTGCGTCTTTTAAAATGCTTGGGGTTCCAGGAGGAGGATATGCAATGGTTTACTTTAAATGAACACGAAAGCAACATTCATGTTGCCCCTATGTGGACACTAGCAAGCTTCAAAAGATTGAAGCACTTGTCAAGTCAATATGCGGGTCGGTTCAGTCTTATAGTTGCTTTCTCTCCAACTGGTTGGACATTTGGTAAAGGGAAAAAGAAGTCTCCTGGAAGAAGGTGGCAGCAGGGTACTATTATAAGGTATGAAGTGCCTTACAGTGAGCATTGCAGCTTTACAGAACTCAGAGAGTTTGTAAAACTTATATCTCCTGATAACATTATACCAAGCGTTAATAATGATGGACCAGAATCTGCCGATGCAATGATTTCCCTCATAAGGACTCATCCTCTTAATCTAGCAGTGTCGAGGTTTCTGTCAACTGACTTAAATTTGGAAATTTTGAGGGGCTACCTCCTCTTCCCTTTTGATCCAGAAGTAGCTCACTTCTTTTCCAGCAAAAAGGTTAAGCTTATGAAAGTTCTTGCTGCACTGCAATCTGCTGGTCTCATTGTAAAGTAG 2175 0.4211 MMSELDDSDEFEILLTQTTNNHFPFKKAKHKTTAFCGISKENAPPNVSSPIYSDGYDIENCSLDFIPSTIDSVGNASTVSSSASDLKTKKSTYFSNSIESKLVESRRTHALDADSELNSCYELDGVFRCPLCEVDISDLNEEQRHLHTNHCLDKGEDVVALPDGDIGVQFVPKVSRVVDWLRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGITALGPRKKIVNALSELRKGTAPLNEKHDDVLAEPRGIRNQKVKMQHNKSERKVEGTTKPAANKLITEYFPGFAINGKKVSAAPGEQQQQHEMENSGSVSGRKLKAKKMSTNRKLRDVPKWCVIPGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSVTARLVNLNIGIPYDKLHVLPLNQTVEIAGIDVTCLDANHCPGSIIILFQPPNGKVVLHTGDFRFNEEIAINSFLQMCPVHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPRTIFLIGSYTIGKERLFLEVARSLRKKVYVTAAKLRLLKCLGFQEEDMQWFTLNEHESNIHVAPMWTLASFKRLKHLSSQYAGRFSLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHCSFTELREFVKLISPDNIIPSVNNDGPESADAMISLIRTHPLNLAVSRFLSTDLNLEILRGYLLFPFDPEVAHFFSSKKVKLMKVLAALQSAGLIVK* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01302 724 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 328 662 - -
Rops10g01302 724 Pfam DNA repair metallo-beta-lactamase 548 652 IPR011084 -
Rops10g01302 724 MobiDBLite consensus disorder prediction 297 312 - -
Rops10g01302 724 Gene3D - 480 627 - -
Rops10g01302 724 Pfam SAM domain (Sterile alpha motif) 173 233 IPR001660 GO:0005515
Rops10g01302 724 FunFam DNA ligase 6 339 497 - -
Rops10g01302 724 FunFam DNA cross-link repair 1A protein 480 627 - -
Rops10g01302 724 CDD SNM1A-1C-like_MBL-fold 321 477 - -
Rops10g01302 724 ProSiteProfiles SAM domain profile. 172 235 IPR001660 GO:0005515
Rops10g01302 724 SMART SAM_4 170 235 IPR001660 GO:0005515
Rops10g01302 724 SUPERFAMILY SAM/Pointed domain 173 234 IPR013761 -
Rops10g01302 724 Gene3D - 171 244 IPR013761 -
Rops10g01302 724 SUPERFAMILY Metallo-hydrolase/oxidoreductase 343 659 IPR036866 -
Rops10g01302 724 CDD SAM_superfamily 176 231 - -
Rops10g01302 724 Gene3D - 339 649 IPR036866 -
Rops10g01302 724 MobiDBLite consensus disorder prediction 297 325 - -
Rops10g01302 724 ProSitePatterns Zinc finger C2H2 type domain signature. 129 150 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01302 Rops-Chr10 25608632 25620297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01302 175 229 Glycosyltransferase AT3G07170 49.091 1.50e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01302 K15340 - gmx:100816321 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01302 10 25608632 25620297 Rops10g01302 10 25608632 25620297 ECH