Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01301 ATGGGGTGGTGTGTGGTGACCGGAGGTAGGGGCTTTGCGGCGAGGCATTTGGTTGAGATGTTAATCCGATACAACATGTACTCCGTTCGAATCGCCGATTTGGGACCCACCATTGAACTTGAACCCAGTGAGCAATTGGGGATTCTCGGTGAAGCTTTGCACTCTGGTCGTGCAAGCTATATCTCTCTCGATCTTCGAAACAAGGAGCAAGTCTTAAAAGCATTGGAAGGAGCTGAGGTTGTGTTCCATATGGCTGCTCCGAACTCTTCTATTAACAACTACCAGCTACATCATTCGGTTAATGTTCAAGGAACGAAGAATGTGATCGACGCTTGTGTGGAGCTAAATATAAAGCGACTCATTTACACCAGCTCTCCCAGTGTTGTCTTTGATGGAGTTCATGGAATTCATAACGGAAATGAAACATTGCCCTATCCACCTTCGCATAATGATCATTATTCAGCAACTAAAGCCGAGGGTGAGGCATTGATTATTAAGTCTAATGGGACTAATGGGCTCTTAACGTGCTGCATACGACCTAGCAGCATTTTTGGGCCCGGTGATAGACTGTTGGTGCCTTCAGTGGTTGATGCTGCCAGGGCAGGCAAATCCAAGTTCATTATTGGGGATGGCAATAACATTTATGATTTCACTTATGTTGAAAATGTGGCTCATGCTCATATATGTGCTGAACGAGCTCTAGCTTCAGAGGGGACAGTTTCTGAAAAAGCTGCAGGAGAGGCATATTTCATCACAAATATGGAACCTATAAAGTTTTGGGAGTTCATGTCCCTGATTTTGGAAGGTCTTGGATATAAAAGGCCAACAATAAAGATCCCTGTCTTTGTTATCATGCCCATTGCACATTTGGTGGAGTGGATATATAGGCTGCTAGGCCCATATGGGATGAAGGTTCCTCAGCTGACCCCTTCGAGAATAAGACTCCTGTCTTGCAGCAGATATTTTGATTGCTCAAAAGCAAAGGATCGCCTTGGCTATGCACCCATCATAACACTACAGGAGGGTCTACGGAGGACGATTGAATCATATCCACACTTGAGGGCCGAAAATCAACCTAAAACTAAAAGAGAAGGTCCCTCAAAAGCTTCCATATATCTTGGAAGTGGAAGAGTTGCTGACACATTGCTTTGGAAGGATAAAAAGAAAACTTTCACTGCATTGTTAGTCTTGATTGCAATATACTTCAACTTCATTGCATCAGAGATTACCATCATTACTGCTCTTACAAAGCTTCTATTGTTCGCATCAATGTTTTTATTCATTCATGGAATTGTACCTGCAAAAATATTGGGGTATACTATTGAGAAAATGCCCACCTCATGGTTTCACTTATCAGAAGATAAGTCACATCAAATTGCTCTCTCAGTAGCCTCATCGTGGAATTTTGCTGTGAATGTTTTGAAATCCCTTGCTGAAGGGAATAATTGGGTGCTTTTCTTTAAGGTTGTTTTCTCTCTACTCGTTCTTAGCTTCCTTGGAGCCTTTTCACTTCAGACCATATATACTATAGGGCTTACCTTTGCATTTATAGCTTTCTACATTTATGAAAAGAAGGAGGAAGACATTGATGGAATATTTATAAAAACGCAATCTTTTGGGTGCAAATTGAAATCTGATATCACCAGGAAGTTTCTCTCTTCAAAGAAGATTGATTGA 1677 0.4174 MGWCVVTGGRGFAARHLVEMLIRYNMYSVRIADLGPTIELEPSEQLGILGEALHSGRASYISLDLRNKEQVLKALEGAEVVFHMAAPNSSINNYQLHHSVNVQGTKNVIDACVELNIKRLIYTSSPSVVFDGVHGIHNGNETLPYPPSHNDHYSATKAEGEALIIKSNGTNGLLTCCIRPSSIFGPGDRLLVPSVVDAARAGKSKFIIGDGNNIYDFTYVENVAHAHICAERALASEGTVSEKAAGEAYFITNMEPIKFWEFMSLILEGLGYKRPTIKIPVFVIMPIAHLVEWIYRLLGPYGMKVPQLTPSRIRLLSCSRYFDCSKAKDRLGYAPIITLQEGLRRTIESYPHLRAENQPKTKREGPSKASIYLGSGRVADTLLWKDKKKTFTALLVLIAIYFNFIASEITIITALTKLLLFASMFLFIHGIVPAKILGYTIEKMPTSWFHLSEDKSHQIALSVASSWNFAVNVLKSLAEGNNWVLFFKVVFSLLVLSFLGAFSLQTIYTIGLTFAFIAFYIYEKKEEDIDGIFIKTQSFGCKLKSDITRKFLSSKKID* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01301 558 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 5 280 IPR002225 GO:0003854|GO:0006694|GO:0016616
Rops10g01301 558 Gene3D - 2 354 - -
Rops10g01301 558 ProSiteProfiles Reticulon domain profile. 378 530 IPR003388 -
Rops10g01301 558 FunFam Reticulon-like protein 1 355 - -
Rops10g01301 558 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 4 349 - -
Rops10g01301 558 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 350 IPR036291 -
Rops10g01301 558 Pfam Reticulon 378 533 IPR003388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01301 Rops-Chr10 25601548 25608586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01301 5 367 Lipid Metabolism Gene Families AT2G33630 32.808 1.93e-49 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01301 K23558 - gmx:100799363 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01301 10 25601548 25608586 Rops10g01301 10 25601548 25608586 ECH