Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01294 ATGAACTTATCCAAGAAAGGGTCCCCGACGGATGCAAAGCTATTCAGCCCAACCAAGGCAACCACTCTGAATCCAAATGCAGCGGAGTTTATTCCTTTTTCCCTCAGATCATCTTTATCTGGAACTACCAGCTCGGTAGATGCCTCGGCAAGGCTTACTACTGCTGGAGCTCTTGGGAAAGCAGTTTTAGATAGATCAGAATCATCCATTTCGAATAATTCTGATGATGAGGTGCACCGATACTGGCAATGTCAGCTCCCTGATGATATAACCCCTGATTTCAAGGTCACTGGAGAAGATGAGTCCCAAGCTCTTAATGACCTTTCTTTAGCAGGTTTATCCATACATGATGACAATGAAGCCACAAGGTTTCCTTCTTCTAAAGGAAATGCATATTTGATAAATGAGTTGGAAGAATTATCTCCACAACATGTTAATAGCAATAGCTTTGCTGATAAATTAAGGTTTTCCAATTCAAGCTACAGGGAGGACCCATCTTCTACAAACTTCTTGAACACTTTGACAAAGCCTTGGGATAGGCCAATTGGGAGTGCCAACCAGCATATTAGCAGTGGTCAAGAGGGGCTTACTTATGATGACAACTCCAGACATGGATTCTTAAATGATGTGTTGGCTGAGAATGCAATTGTGGATGGTACTGATTTAAATCCTTTGGAGTTTTTAGCTTCTCTGTTCCCTGGTTTTGCTGCAGAAAGTCTTGCAGAAGTTTACTTTGCCAATGGATGTGATTTACATTTGACCACTGAGATGCTCACTCAGTTAGAGCTCCAAGTTGATGGTAGTTTCAATCAGCATCCGAGTTCAAAGACTCTGTCAGCTCCCAATCTCAGTGCAATGGACTTCCCTGCACTTACTTCACCAGATGGCCAGACTGCTTCTGCAAAATATGCTGTAGATAATGTCCAACAAAATGGCAATCCTTACCAATCATCTGACAGTGACATGCTGTTTTACAAATCTAGTTCTTCAGTTCCATCTAGAGGTGATATTGACTTCGCTTCAGCTGTTAGGAAGTTGGCTTCTCAGGATTCTGGTATTTGGAAGTATGACAAAAATGGCTCTGGTGATGCTGCTATTGGCTCAAGTAGGAGTTCAAATGTTCTGGCTAGTGGCTATAATGGTGGACAGGGGAGATCCAACTTTGGTGATCAGTTACAGAACCGTGGTTCAGCTCGGGCAGCTCCTGTTTGGCTTGAAACCGGTGATGCAGTTGCAAATATGTATTCAGAGCTGCGGGAGGAGGCTCGTGATCATGCACGCATACGTAATGCATATTTTGAGCAGGCACGGCAAGCCTATCTTGTTGGCAATAAGGCCCTAGCAAAGGAACTAAGTGTTAAAGGGCAACTGCACAACATGCATATGAAAGCAGCTCATGGAAAAGCTCAAGAATCCATTTACCGCCATAGAAATCCAGTTGCTCCAGAGATGCAGGGCAATGGAAGAGGACATGAGAGGATGATAGACCTACATGGATTGCACGTAAGTGAAGCCATTCATGTGCTGAAACATGAATTGAGTGTGCTAAAAAGCACCGCCATAGCTGCTGAGCAGCGCCTGCAGGTTTACATTTGTGTGGGTACAGGTCATCATACCAGGGGTTCCCGCACTCCTGCAAGACTTCCAATAGCTGTACAGCGTTTTCTGCTTGAAGAGGGCCTTGACTTTACAGAACCTCAGCCAGGCCTACTTCGTGTTGTGATATATTGA 1731 0.4431 MNLSKKGSPTDAKLFSPTKATTLNPNAAEFIPFSLRSSLSGTTSSVDASARLTTAGALGKAVLDRSESSISNNSDDEVHRYWQCQLPDDITPDFKVTGEDESQALNDLSLAGLSIHDDNEATRFPSSKGNAYLINELEELSPQHVNSNSFADKLRFSNSSYREDPSSTNFLNTLTKPWDRPIGSANQHISSGQEGLTYDDNSRHGFLNDVLAENAIVDGTDLNPLEFLASLFPGFAAESLAEVYFANGCDLHLTTEMLTQLELQVDGSFNQHPSSKTLSAPNLSAMDFPALTSPDGQTASAKYAVDNVQQNGNPYQSSDSDMLFYKSSSSVPSRGDIDFASAVRKLASQDSGIWKYDKNGSGDAAIGSSRSSNVLASGYNGGQGRSNFGDQLQNRGSARAAPVWLETGDAVANMYSELREEARDHARIRNAYFEQARQAYLVGNKALAKELSVKGQLHNMHMKAAHGKAQESIYRHRNPVAPEMQGNGRGHERMIDLHGLHVSEAIHVLKHELSVLKSTAIAAEQRLQVYICVGTGHHTRGSRTPARLPIAVQRFLLEEGLDFTEPQPGLLRVVIY* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01294 576 CDD CUE_CID7_like 222 264 IPR041806 -
Rops10g01294 576 Gene3D - 462 575 IPR036063 -
Rops10g01294 576 Pfam Domain of unknown function (DUF1771) 415 478 IPR013899 -
Rops10g01294 576 SMART SMR_2 492 576 IPR002625 -
Rops10g01294 576 SMART DUF1771_2 414 479 IPR013899 -
Rops10g01294 576 ProSiteProfiles Smr domain profile. 495 576 IPR002625 -
Rops10g01294 576 SUPERFAMILY SMR domain-like 493 574 IPR036063 -
Rops10g01294 576 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 1 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01294 Rops-Chr10 25530618 25535303 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01294 - - gmx:100814198 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01294 10 25530618 25535303 Rops10g01294 10 25530618 25535303 ECH