Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01266 ATGGCTCTGGCATTCCGGAGAGTCACAGCGAAACCTTGTTCTATTCCAAACCCTTCACTCGTAACCTCCATTACCTCAATCCTTGAAACCTTAAATCCTCAAAACCCAGATTGTGAACCCCTTAAAAAGCTGTCATGTCACCTCACACCAAGCTTGGTTATCCAAGTGATTAAGAATGTAAAGAACCCCCATCATGCATTGTACTTCTTCAACTGGGCCTCAAATCCTGAACCCAACCCCAAAAACTACTCTCATACTCGCTCATGTTACGCCGCCATAACCGATGTCTTGCTTTCTCACTCCCTTTTCTCCACCGCACACTCCCTCCTTTGCCGCTCCAACAAACTCTCCGATTTCCTCATCTCCAAATTCATCCACGCTTTGGGTGACCGTGGCGATATCAGGGGTGCCATTCATTGGTTCCATAAAGCTAAAACCTTTTCAAGAGGACAATGTGCGTTCTCATGTAATGCCATATTGGGTGTGTTGGTGAGAACAAACAGGGTCAATCTGGCCAAAGCTATCTACGATCATATCGTGGAAGAAGCAGTGGTGAAACCCGATGTTTTCACTTACACCACAATGATTAGGGGGTTTTGCAAAATGGGCATGGTCCAGAATGCATGGAAGGTGTTCGATGAAATGCGGTGTGAGCCCAACACGATTACTTACAACACAATGATCCACGTGTTTTGCAAGAAAGGTGACATGGAGGGTGCCAAGAGGGTTTTCGATAGATTGGTGGAAAGTAAGAGCTGCAAACCAGATGTGGTGACTTTTACTACTCTGATTGATGGGTATTCCAAGAAAGGTGAATTCCAAGAGGCACTGAATTGCTTGAAGGAGATGCTGGAACAGGGTTGTCGCCCTAATGTTGTGACTTACAATGCATTGATTGAAGGTCTTTCTTTGAGTGGGAATGTGGATGAGGCTAGGAGGATGATGACTAGGATGAGGTTGAATGGTTTAAAAGACAATGTTGCCACAAATACAAGCATATTAAAAGGTTTTTGCATTTTGGGGAAGTCTGATGATGCCATCAAGCATTTTAAGGAAATGGTTAGTCGTGGGATGAATCCAGATGTGAAAGCATACAGTGTCATTGTCAACGAGTATTGCAAAATTAGAAAACCAAATGAAGCAGTTTCACTTCTTAAGGAAATGTCTGCCAGGGGGATTAAGCCAAGTGTGTCAAGTTTCAATGCAGTGTTTAGAGTTCTTGTGGCTGAGGGGAAGCTTGATGAAGTAGTTCTTCTTTTAAAGCAGATGCCCCAATTGGGTTTCTCACCCAATTTCTTATCATATAGCATAGTGATATGTGGTCTTTGTAAAGTGAAGGGTGGGATGCAACAAGTTGAAGAGCTAGTTTGGGACATGCTCCACAATGGACATAACCTGGATGCCACCATGTACAACTGCTTACTTCAGGGATATTGTGAAGATGGGGATGAAGAAATGGCATTGAAAACGGTTTATGATGCAATTGCCAACAACTTTGTAATCAACAAAGACACTTTCTGCACTTTTGTCAAGGAGTTGTGTGCAAAGGGGAAAGTTAAAGAGGTGGAGACAGTATTTGAAGAGATGTGCAGGAATTGCCCGGTGTCTGATATAAATGCTTATAGATTGGTGCTTTGTCAGTTGGGTGGGAAAGCTGCGGCAAGTAGAAATTATATTCAGCTAATTGATTTCTTGTAG 1698 0.4311 MALAFRRVTAKPCSIPNPSLVTSITSILETLNPQNPDCEPLKKLSCHLTPSLVIQVIKNVKNPHHALYFFNWASNPEPNPKNYSHTRSCYAAITDVLLSHSLFSTAHSLLCRSNKLSDFLISKFIHALGDRGDIRGAIHWFHKAKTFSRGQCAFSCNAILGVLVRTNRVNLAKAIYDHIVEEAVVKPDVFTYTTMIRGFCKMGMVQNAWKVFDEMRCEPNTITYNTMIHVFCKKGDMEGAKRVFDRLVESKSCKPDVVTFTTLIDGYSKKGEFQEALNCLKEMLEQGCRPNVVTYNALIEGLSLSGNVDEARRMMTRMRLNGLKDNVATNTSILKGFCILGKSDDAIKHFKEMVSRGMNPDVKAYSVIVNEYCKIRKPNEAVSLLKEMSARGIKPSVSSFNAVFRVLVAEGKLDEVVLLLKQMPQLGFSPNFLSYSIVICGLCKVKGGMQQVEELVWDMLHNGHNLDATMYNCLLQGYCEDGDEEMALKTVYDAIANNFVINKDTFCTFVKELCAKGKVKEVETVFEEMCRNCPVSDINAYRLVLCQLGGKAAASRNYIQLIDFL* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01266 565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Rops10g01266 565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Rops10g01266 565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Rops10g01266 565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Rops10g01266 565 Pfam PPR repeat 185 216 IPR002885 -
Rops10g01266 565 Pfam PPR repeat 217 246 IPR002885 -
Rops10g01266 565 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 49 357 - -
Rops10g01266 565 SUPERFAMILY HCP-like 130 360 - -
Rops10g01266 565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Rops10g01266 565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 218 IPR002885 -
Rops10g01266 565 Pfam PPR repeat family 255 302 IPR002885 -
Rops10g01266 565 Pfam PPR repeat family 395 444 IPR002885 -
Rops10g01266 565 Pfam PPR repeat family 326 374 IPR002885 -
Rops10g01266 565 Gene3D Tetratricopeptide repeat domain 342 456 IPR011990 GO:0005515
Rops10g01266 565 Gene3D Tetratricopeptide repeat domain 245 341 IPR011990 GO:0005515
Rops10g01266 565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 255 IPR002885 -
Rops10g01266 565 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Rops10g01266 565 NCBIfam pentatricopeptide repeat 222 257 IPR002885 -
Rops10g01266 565 NCBIfam pentatricopeptide repeat 364 397 IPR002885 -
Rops10g01266 565 NCBIfam pentatricopeptide repeat 190 219 IPR002885 -
Rops10g01266 565 NCBIfam pentatricopeptide repeat 331 362 IPR002885 -
Rops10g01266 565 NCBIfam pentatricopeptide repeat 258 292 IPR002885 -
Rops10g01266 565 NCBIfam pentatricopeptide repeat 505 532 IPR002885 -
Rops10g01266 565 NCBIfam pentatricopeptide repeat 399 431 IPR002885 -
Rops10g01266 565 NCBIfam pentatricopeptide repeat 293 323 IPR002885 -
Rops10g01266 565 NCBIfam pentatricopeptide repeat 470 502 IPR002885 -
Rops10g01266 565 Gene3D Tetratricopeptide repeat domain 114 244 IPR011990 GO:0005515
Rops10g01266 565 Gene3D Tetratricopeptide repeat domain 460 532 IPR011990 GO:0005515
Rops10g01266 565 Pfam PPR repeat 505 532 IPR002885 -
Rops10g01266 565 Pfam PPR repeat 470 490 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01266 Rops-Chr10 25186843 25188752 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01266 340 561 Glycosyltransferase AT1G05670 23.246 6.35e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01266 - - aprc:113866240 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01266 10 25186843 25188752 Rops10g01266 10 25186843 25188752 ECH