Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01258 ATGAGGAAGACGAAGAAGAGAAACAGTGATGGCAGTGGCAAAGAAAAAGAAGAAAAAGGGGTGCGTTTGAAGGGTGCAGAGAGGTCATCGTACTTCGCAAGGAGAGAGGCAGCGAAGATATTGAAGGTGGTTCTTGAAGGAGACTCAAAGCGTCATGCCATTGCCTCAATCAAATCCCTTATCTATCAACCCTCCGTTAGAAACAAAAAAGCCACTTTTGCTCTCATATGTCAAACCCTCAAGCATCTTCAAATTATCAAGGATGTCTTGGAAGCTTCTTCTATCCTCAACACCAAGTGGAAGAGGCAACAAGAATTGATTTACATCATTGTCTATGATATCCTTTTCGGTCAGGCAGTTCCACTATTTGGTGATGCAGAGAAGTACCTTATGCGCCACAAAGACGCTCTACATTCAACTCTGAAACAGCTTATGTTACAGAGAAATGTGAAGACTGTTAAACAATTGATTGCTCTGCATGAAGTTCCTGATGTATCTGTACCTCGTTATGTTCGCGTGAATACACTTAAACTGGATGTTGATTCTGCCTTACTTGAACTTCAGAAAAAATATTCGGTTCAAAAGGATGATTTAATGCCTGACTTACTGATACTCCCACCAGGCACTGATTTACATGATCATCCTCTTGTCAAGAATGGAAGTATCTTTTTGCAAGGTAAGGCGAGTTCCATGGTGGCACCAGCCCTTAGCCCTGAACCAGGATGGGAGGTTCTTGATGCTTGTGCGGCACCAGGAAACAAAACTGTCCACCTTGCTGCCCTTATGAAGAGAAAGGGTAGGATTATAGCATGTGAGCTGCATAAAGAAAGGATTAAGCGTTTGAAAGACACTGTAAAGCTTTCTGGTGCTTCTAACGTACAAGTTCTCAATGAGGATTTCTTGAATATAAATCCAGAGGCTCCTCCATATTCTAAGGTGAAGGCTATTCTTTTGGATCCTTCCTGCTCTGGTTCTGGTACTGCGGCTTCAAGACTAGATCATCTGCTCCCGTCTAAAGCAGCAGGTCAGGATACTGATATGGAAAGATTGAACAAGCTTGCAGCCTTTCAGAGAAAGGCTCTTCAGCATGCTTTACTTTTTCCAGCGGTTGAAAAAGTTGTCTACAGTACGTGTTCAATCAACCAAAGTGAGAATGAAGATGTCATCAAATCTGTTCTGCCGATAGCCGAATCACATGGATTTCAACTGGCAAAGCCCTTTCCCGAGTGGCAGTGCCGTGGTCTTCCAATATTTGAAGGCTCTGAAAACCTGGTTCGTACAGATCCTGCCAAGCATGGTGAAGGTTTCTTCATTGCCTTGTTTGCCAAGAAAGATGCTAACCTTTCGGTGAAGCCAAATAGAAATGAAAGCTCCACTAGAACTAGAAACTCGCTAAGGAAGAAACCTATTCCCCTGTTTATTCGCACTGATCCATTTAGAATGTGGTTATATGATCAATTGAACCGGCGTAGAATAACAAATAGGTCCCGTAGCTGCCGAAATTGA 1506 0.429 MRKTKKRNSDGSGKEKEEKGVRLKGAERSSYFARREAAKILKVVLEGDSKRHAIASIKSLIYQPSVRNKKATFALICQTLKHLQIIKDVLEASSILNTKWKRQQELIYIIVYDILFGQAVPLFGDAEKYLMRHKDALHSTLKQLMLQRNVKTVKQLIALHEVPDVSVPRYVRVNTLKLDVDSALLELQKKYSVQKDDLMPDLLILPPGTDLHDHPLVKNGSIFLQGKASSMVAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGRIIACELHKERIKRLKDTVKLSGASNVQVLNEDFLNINPEAPPYSKVKAILLDPSCSGSGTAASRLDHLLPSKAAGQDTDMERLNKLAAFQRKALQHALLFPAVEKVVYSTCSINQSENEDVIKSVLPIAESHGFQLAKPFPEWQCRGLPIFEGSENLVRTDPAKHGEGFFIALFAKKDANLSVKPNRNESSTRTRNSLRKKPIPLFIRTDPFRMWLYDQLNRRRITNRSRSCRN* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01258 501 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 37 444 IPR023267 GO:0001510
Rops10g01258 501 Gene3D Vaccinia Virus protein VP39 225 450 IPR029063 -
Rops10g01258 501 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 159 444 IPR001678 GO:0008168
Rops10g01258 501 PRINTS RNA (C5-cytosine) methyltransferase signature 426 443 IPR023267 GO:0001510
Rops10g01258 501 PRINTS RNA (C5-cytosine) methyltransferase signature 314 326 IPR023267 GO:0001510
Rops10g01258 501 PRINTS RNA (C5-cytosine) methyltransferase signature 216 230 IPR023267 GO:0001510
Rops10g01258 501 PRINTS RNA (C5-cytosine) methyltransferase signature 370 386 IPR023267 GO:0001510
Rops10g01258 501 PRINTS RNA (C5-cytosine) methyltransferase signature 245 255 IPR023267 GO:0001510
Rops10g01258 501 CDD AdoMet_MTases 244 332 - -
Rops10g01258 501 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 168 444 IPR029063 -
Rops10g01258 501 Gene3D Sun protein; domain 3 160 224 - -
Rops10g01258 501 MobiDBLite consensus disorder prediction 1 24 - -
Rops10g01258 501 MobiDBLite consensus disorder prediction 8 24 - -
Rops10g01258 501 Pfam 16S rRNA methyltransferase RsmB/F 235 441 IPR001678 GO:0008168
Rops10g01258 501 FunFam Putative 28S rRNA (Cytosine-C(5))-methyltransferase 160 224 - -
Rops10g01258 501 FunFam Methyltransferase NSUN5, putative 225 449 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01258 K15264 - gmx:100775620 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01258 10 25147928 25153160 Rops10g01258 10 25147928 25153160 ECH