Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01241 ATGGATTCTTCACAAGGGTCCACGTTGGCTGGTTTGGTGGAAAATGCATCATCGATTCAGAGGGATGAATCTTGTTTTGATGGTGTCCCTATATATGTTAAGGAGCTAATTGCTGGAGGCTTTGCCGGTGCACTCTCTAAGACTACTGTTGCACCCCTCGAACGGGTCAAGATACTTTGGCAGACAAGGACAGGAGGATTTCAGTCTCTTGGTGTATACCAATCTTTGAATAAGTTATTCAAGCATGAAGGATTTTCAGGATTTTACAAAGGAAATGGAGCTAGTGTTATCCGGATTGTTCCCTATGCAGCCTTGCATTTTATGACATATGAGCGGTATAAAAGTTGGATGTTGAATAATTATCCTATGTTAGGATCAGGTCCCTTTGTAGATCTTCTAGCTGGCTCCGCAGCAGGAGGAACTTCAGTTTTATGTACATACCCTTTGGATCTTGCTCGTACCAAACTTGCTTACCAGGTGGCGGACCCAAGAGGAAGTATCAAAGATGGTATGAAAGGAGTTTGTTCTCAACCTGCACATAATGGGATTAAAGGTGTACTTACCAGTGTCTATAAGGAAGGGGGAGTTCGTGGACTTTATAGGGGTGCAGGACCAACCCTTACTGGAATTCTTCCATATGCTGGTTTAAAGTTCTACATGTATGAGAAATTAAAGATGCATGTTCCTGAAGAACATCAAAAGTCCATTTTGATGCGCCTGTCTTGTGGAGCTTTAGCTGGATTGTTTGGGCAGACTTTAACATACCCTTTAGATGTTGTTAAGAGACAGATGCAGGTTGGCAGCCTGCAAAATGCAGCTCATGAGGATACCAGATACAGAAATACATTTGACGGACTTAGGATGATTGTTCGTAAGCAAGGATGGAGGCAGTTGTTTGCAGGCGTAAGCATTAATTATATAAGGATTGTTCCTTCAGCTGCAATCAGTTTCACGACATATGACATGATGAAGGCTTGGCTTGGCATACTACCCCAACAAAAGTCTCAATCAGTTTCGGCATCATAA 1026 0.425 MDSSQGSTLAGLVENASSIQRDESCFDGVPIYVKELIAGGFAGALSKTTVAPLERVKILWQTRTGGFQSLGVYQSLNKLFKHEGFSGFYKGNGASVIRIVPYAALHFMTYERYKSWMLNNYPMLGSGPFVDLLAGSAAGGTSVLCTYPLDLARTKLAYQVADPRGSIKDGMKGVCSQPAHNGIKGVLTSVYKEGGVRGLYRGAGPTLTGILPYAGLKFYMYEKLKMHVPEEHQKSILMRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNAAHEDTRYRNTFDGLRMIVRKQGWRQLFAGVSINYIRIVPSAAISFTTYDMMKAWLGILPQQKSQSVSAS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01241 341 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Rops10g01241 341 PRINTS Mitochondrial carrier protein signature 91 111 IPR002067 GO:0055085
Rops10g01241 341 PRINTS Mitochondrial carrier protein signature 243 265 IPR002067 GO:0055085
Rops10g01241 341 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Rops10g01241 341 PRINTS Mitochondrial carrier protein signature 141 159 IPR002067 GO:0055085
Rops10g01241 341 PRINTS Mitochondrial carrier protein signature 200 218 IPR002067 GO:0055085
Rops10g01241 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 116 IPR018108 -
Rops10g01241 341 Gene3D Mitochondrial carrier domain 31 328 IPR023395 -
Rops10g01241 341 SUPERFAMILY Mitochondrial carrier 33 322 IPR023395 -
Rops10g01241 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 227 IPR018108 -
Rops10g01241 341 PANTHER SOLUTE CARRIER FAMILY 25 33 328 - -
Rops10g01241 341 Pfam Mitochondrial carrier protein 127 228 IPR018108 -
Rops10g01241 341 Pfam Mitochondrial carrier protein 32 120 IPR018108 -
Rops10g01241 341 Pfam Mitochondrial carrier protein 234 327 IPR018108 -
Rops10g01241 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 234 326 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01241 Rops-Chr10 24983879 24988132 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01241 114 339 Organic Solute Cotransporters AT4G26180 27.119 6.87e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01241 - - gmx:100800243 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01241 10 24983879 24988132 Rops10g01241 10 24983879 24988132 ECH