Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01199 ATGATTCGAAGAACTGTGTGCTTTCCAAGTTTAAGGAAATTGCTTCTTCCAGCCGGTTATCCGTTTTCTTCGTCCAAGATTGGGACTTGCAATGGATATGCATCTCAGCCCTCCTCTCTTCAAATCCCAGACCCAACTTACAGTGATGATGAATATGCTAATGTGGATTGGGACAGCCTTGGGTTTGGACTCATGCCAACTGATTACATGTACATTACTAAATGTGGCGTGGGCCAGAATTTTGGACAAGGACAACTCAGTCGTTATGGGAACATTGAACTTAGTCCATCAGCTGGGGTCCTAAATTATGGTCAGGGATTATTCGAAGGCACCAAAGCATATAGAAAAGAAAATGGGCAGCTACTGCTGTTCCGTCCAGAACAAAATGGCATTCGCATGAAGAATGGTGCCGAAAGAATGTGCATGACATCCCCTTCCATTGATCAATTTGTTGATGCTTTGAAGCAAACTGCCCTGGCTAATAAGCGTTGGGTTCCTCCACCTGGAAAGGGATCATTGTACCTTAGACCTCTGCTCTTAGGAAGTGGTCCAGTTTTGGGTTTGGCTCCCGCACCTGAATACACATTCCTCATATATGCTTCCCCTGTTCGCAATTATTTCAAGGAGGGTTCTGCGCCGCTCAATTTATATGTGGAGTTTGATTTTGACCGTGCTTCTCGCCGTGGTACTGGAAGCGTTAAAACCATTTCCAATTATGCTCCGGTCTTGATGGCACAAATGAGAGCCAAGAGCAGAGGATTTTCGGATGTGTTATACCTTGATTCAATCTCCAAGAAAAATCTGGAGGAGGTCTCCTCTTGCAACATTTTTATTGCCAAGGGCAAATACATCTCAACACCTGCTACCAATGGAACCATTCTTGCCGGAGTTACCAGAAAAAGTGTAATTGAAATTGCTAGTGATCTCGGCTATCAGGTAGAAGAGCGTGCTGTAGCCGTGGATGAATTGATTGACGCCGATGAAGTTTTCTGCACAGGAACTGCTGTTGGTGTTGCCCCTGTAGGGAGTATCACATACCAGGATAGAAGGATGGAATATAAAACAGGTTCTGAAACTATTTGTCAAGAGCTGTACAACACCATTTTAGGAATTCAAACTGGTATTATTGAAGATAAGAAGGGATGGATCGTTGAAGTTGATTAA 1164 0.4381 MIRRTVCFPSLRKLLLPAGYPFSSSKIGTCNGYASQPSSLQIPDPTYSDDEYANVDWDSLGFGLMPTDYMYITKCGVGQNFGQGQLSRYGNIELSPSAGVLNYGQGLFEGTKAYRKENGQLLLFRPEQNGIRMKNGAERMCMTSPSIDQFVDALKQTALANKRWVPPPGKGSLYLRPLLLGSGPVLGLAPAPEYTFLIYASPVRNYFKEGSAPLNLYVEFDFDRASRRGTGSVKTISNYAPVLMAQMRAKSRGFSDVLYLDSISKKNLEEVSSCNIFIAKGKYISTPATNGTILAGVTRKSVIEIASDLGYQVEERAVAVDELIDADEVFCTGTAVGVAPVGSITYQDRRMEYKTGSETICQELYNTILGIQTGIIEDKKGWIVEVD* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01199 387 FunFam Branched-chain-amino-acid aminotransferase 215 386 - -
Rops10g01199 387 Gene3D - 215 386 IPR043132 -
Rops10g01199 387 Pfam Amino-transferase class IV 106 344 IPR001544 GO:0003824
Rops10g01199 387 PANTHER AMINO ACID AMINOTRANSFERASE 37 386 IPR005786 GO:0004084|GO:0009081
Rops10g01199 387 FunFam Branched-chain-amino-acid aminotransferase 38 213 - -
Rops10g01199 387 NCBIfam branched-chain-amino-acid transaminase 83 386 IPR005786 GO:0004084|GO:0009081
Rops10g01199 387 PIRSF BCAT1 37 387 IPR005786 GO:0004084|GO:0009081
Rops10g01199 387 Gene3D - 38 214 IPR043131 -
Rops10g01199 387 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 46 383 IPR036038 GO:0003824
Rops10g01199 387 CDD BCAT_beta_family 93 374 IPR033939 GO:0004084|GO:0009081
Rops10g01199 387 ProSitePatterns Aminotransferases class-IV signature. 270 299 IPR018300 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01199 Rops-Chr10 24413407 24422841 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01199 K00826 - gmx:100782644 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01199 10 24413407 24422841 Rops10g01199 10 24413407 24422841 ECH